PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30751-30800 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | tv | segdup | het | 99.5467 | 99.7541 | 99.3402 | 91.9297 | 5274 | 13 | 5270 | 35 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5862 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | segdup | homalt | 99.8919 | 99.9074 | 99.8765 | 90.2428 | 3235 | 3 | 3235 | 4 | 4 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | tech_badpromoters | * | 98.6111 | 98.6111 | 98.6111 | 50.0000 | 71 | 1 | 71 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 42.8571 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | tv | tech_badpromoters | homalt | 98.7342 | 100.0000 | 97.5000 | 54.5455 | 39 | 0 | 39 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9754 | 99.9671 | 99.9836 | 54.9478 | 6086 | 2 | 6086 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4758 | 99.1531 | 99.8007 | 37.5709 | 18029 | 154 | 18026 | 36 | 2 | 5.5556 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1734 | 98.6530 | 99.6994 | 37.5173 | 11279 | 154 | 11276 | 34 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9852 | 100.0000 | 99.9704 | 37.6087 | 6745 | 0 | 6745 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 82.8897 | 76.2238 | 90.8333 | 92.9947 | 109 | 34 | 109 | 11 | 1 | 9.0909 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 77.3481 | 68.6275 | 88.6076 | 92.5047 | 70 | 32 | 70 | 9 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.1220 | 95.1220 | 95.1220 | 93.7785 | 39 | 2 | 39 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6319 | 99.3746 | 99.8906 | 32.4559 | 7309 | 46 | 7305 | 8 | 1 | 12.5000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4561 | 99.0468 | 99.8688 | 31.9345 | 4572 | 44 | 4568 | 6 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9452 | 99.9635 | 99.9270 | 33.2602 | 2737 | 1 | 2737 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 88.8889 | 100.0000 | 96.4602 | 8 | 1 | 8 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 95.5556 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.8022 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l100_m0_e0 | * | 99.2701 | 99.4001 | 99.1404 | 70.5461 | 32644 | 197 | 32640 | 283 | 34 | 12.0141 | |
| hfeng-pmm2 | SNP | * | map_l100_m0_e0 | het | 99.0069 | 99.2124 | 98.8022 | 73.2241 | 21038 | 167 | 21034 | 255 | 23 | 9.0196 | |
| hfeng-pmm2 | SNP | * | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.4872 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l100_m0_e0 | homalt | 99.7504 | 99.7418 | 99.7590 | 63.9103 | 11590 | 30 | 11590 | 28 | 11 | 39.2857 | |
| hfeng-pmm2 | SNP | * | map_l100_m1_e0 | * | 99.5195 | 99.5580 | 99.4810 | 66.0017 | 72083 | 320 | 72072 | 376 | 47 | 12.5000 | |
| hfeng-pmm2 | SNP | * | map_l100_m1_e0 | het | 99.3136 | 99.3717 | 99.2555 | 68.4046 | 45074 | 285 | 45063 | 338 | 28 | 8.2840 | |
| hfeng-pmm2 | SNP | * | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.9663 | 41 | 0 | 41 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l100_m1_e0 | homalt | 99.8648 | 99.8704 | 99.8593 | 60.9853 | 26968 | 35 | 26968 | 38 | 19 | 50.0000 | |
| hfeng-pmm2 | SNP | * | map_l100_m2_e0 | * | 99.5209 | 99.5633 | 99.4785 | 67.6209 | 73641 | 323 | 73630 | 386 | 47 | 12.1762 | |
| hfeng-pmm2 | SNP | * | map_l100_m2_e0 | het | 99.3150 | 99.3793 | 99.2508 | 69.6789 | 46111 | 288 | 46100 | 348 | 28 | 8.0460 | |
| hfeng-pmm2 | SNP | * | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.8945 | 42 | 0 | 42 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l100_m2_e0 | homalt | 99.8674 | 99.8728 | 99.8619 | 63.3992 | 27488 | 35 | 27488 | 38 | 19 | 50.0000 | |
| hfeng-pmm2 | SNP | * | map_l100_m2_e1 | * | 99.5245 | 99.5678 | 99.4812 | 67.6245 | 74414 | 323 | 74403 | 388 | 47 | 12.1134 | |