PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30701-30750 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7378 | 99.5218 | 99.9547 | 55.5264 | 11031 | 53 | 11028 | 5 | 1 | 20.0000 | |
| hfeng-pmm2 | SNP | tv | map_l125_m1_e0 | * | 99.2768 | 99.4318 | 99.1223 | 72.3649 | 15925 | 91 | 15923 | 141 | 16 | 11.3475 | |
| hfeng-pmm2 | SNP | tv | map_l125_m1_e0 | het | 98.9851 | 99.2198 | 98.7515 | 74.5484 | 10047 | 79 | 10045 | 127 | 11 | 8.6614 | |
| hfeng-pmm2 | SNP | tv | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l125_m1_e0 | homalt | 99.7782 | 99.7952 | 99.7612 | 67.4839 | 5848 | 12 | 5848 | 14 | 5 | 35.7143 | |
| hfeng-pmm2 | SNP | tv | map_l125_m2_e0 | * | 99.2975 | 99.4481 | 99.1474 | 73.9287 | 16398 | 91 | 16396 | 141 | 16 | 11.3475 | |
| hfeng-pmm2 | SNP | tv | map_l125_m2_e0 | het | 99.0157 | 99.2434 | 98.7891 | 75.7772 | 10363 | 79 | 10361 | 127 | 11 | 8.6614 | |
| hfeng-pmm2 | SNP | tv | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.8917 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l125_m2_e0 | homalt | 99.7840 | 99.8006 | 99.7674 | 69.8673 | 6005 | 12 | 6005 | 14 | 5 | 35.7143 | |
| hfeng-pmm2 | SNP | tv | map_l125_m2_e1 | * | 99.3046 | 99.4537 | 99.1559 | 73.9708 | 16566 | 91 | 16564 | 141 | 16 | 11.3475 | |
| hfeng-pmm2 | SNP | tv | map_l125_m2_e1 | het | 99.0261 | 99.2514 | 98.8018 | 75.8168 | 10474 | 79 | 10472 | 127 | 11 | 8.6614 | |
| hfeng-pmm2 | SNP | tv | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.8917 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l125_m2_e1 | homalt | 99.7860 | 99.8024 | 99.7696 | 69.9104 | 6062 | 12 | 6062 | 14 | 5 | 35.7143 | |
| hfeng-pmm2 | SNP | tv | map_l150_m0_e0 | * | 98.6509 | 98.9938 | 98.3103 | 81.9664 | 4132 | 42 | 4131 | 71 | 6 | 8.4507 | |
| hfeng-pmm2 | SNP | tv | map_l150_m0_e0 | het | 98.2477 | 98.6282 | 97.8701 | 83.2230 | 2804 | 39 | 2803 | 61 | 3 | 4.9180 | |
| hfeng-pmm2 | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l150_m0_e0 | homalt | 99.5118 | 99.7741 | 99.2509 | 78.3981 | 1325 | 3 | 1325 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | SNP | tv | map_l150_m1_e0 | * | 99.1035 | 99.2944 | 98.9134 | 76.5808 | 10835 | 77 | 10833 | 119 | 14 | 11.7647 | |
| hfeng-pmm2 | SNP | tv | map_l150_m1_e0 | het | 98.7581 | 99.0498 | 98.4681 | 78.5736 | 6880 | 66 | 6878 | 107 | 10 | 9.3458 | |
| hfeng-pmm2 | SNP | tv | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.3084 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l150_m1_e0 | homalt | 99.7086 | 99.7212 | 99.6960 | 71.9235 | 3935 | 11 | 3935 | 12 | 4 | 33.3333 | |
| hfeng-pmm2 | SNP | tv | map_l150_m2_e0 | * | 99.1297 | 99.3219 | 98.9383 | 77.9235 | 11278 | 77 | 11276 | 121 | 14 | 11.5702 | |
| hfeng-pmm2 | SNP | tv | map_l150_m2_e0 | het | 98.7968 | 99.0899 | 98.5054 | 79.5966 | 7186 | 66 | 7184 | 109 | 10 | 9.1743 | |
| hfeng-pmm2 | SNP | tv | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l150_m2_e0 | homalt | 99.7184 | 99.7306 | 99.7062 | 74.0814 | 4072 | 11 | 4072 | 12 | 4 | 33.3333 | |
| hfeng-pmm2 | SNP | tv | map_l150_m2_e1 | * | 99.1408 | 99.3306 | 98.9518 | 77.9286 | 11425 | 77 | 11423 | 121 | 14 | 11.5702 | |
| hfeng-pmm2 | SNP | tv | map_l150_m2_e1 | het | 98.8125 | 99.1018 | 98.5248 | 79.6036 | 7282 | 66 | 7280 | 109 | 10 | 9.1743 | |
| hfeng-pmm2 | SNP | tv | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l150_m2_e1 | homalt | 99.7219 | 99.7339 | 99.7098 | 74.0785 | 4123 | 11 | 4123 | 12 | 4 | 33.3333 | |
| hfeng-pmm2 | SNP | tv | map_l250_m0_e0 | * | 97.4026 | 98.0392 | 96.7742 | 93.4737 | 750 | 15 | 750 | 25 | 4 | 16.0000 | |
| hfeng-pmm2 | SNP | tv | map_l250_m0_e0 | het | 97.0435 | 97.5524 | 96.5398 | 93.4041 | 558 | 14 | 558 | 20 | 1 | 5.0000 | |
| hfeng-pmm2 | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | map_l250_m0_e0 | homalt | 98.4615 | 99.4819 | 97.4619 | 93.6122 | 192 | 1 | 192 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | tv | map_l250_m1_e0 | * | 98.2628 | 98.3000 | 98.2257 | 89.1399 | 2602 | 45 | 2602 | 47 | 6 | 12.7660 | |
| hfeng-pmm2 | SNP | tv | map_l250_m1_e0 | het | 97.7031 | 97.5937 | 97.8127 | 89.8457 | 1744 | 43 | 1744 | 39 | 2 | 5.1282 | |
| hfeng-pmm2 | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5484 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l250_m1_e0 | homalt | 99.4179 | 99.7664 | 99.0719 | 87.2692 | 854 | 2 | 854 | 8 | 4 | 50.0000 | |
| hfeng-pmm2 | SNP | tv | map_l250_m2_e0 | * | 98.3016 | 98.4039 | 98.1994 | 89.7037 | 2836 | 46 | 2836 | 52 | 7 | 13.4615 | |
| hfeng-pmm2 | SNP | tv | map_l250_m2_e0 | het | 97.7583 | 97.7835 | 97.7331 | 90.3173 | 1897 | 43 | 1897 | 44 | 3 | 6.8182 | |
| hfeng-pmm2 | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9577 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l250_m2_e0 | homalt | 99.4146 | 99.6798 | 99.1507 | 88.1241 | 934 | 3 | 934 | 8 | 4 | 50.0000 | |
| hfeng-pmm2 | SNP | tv | map_l250_m2_e1 | * | 98.3213 | 98.4225 | 98.2204 | 89.7650 | 2870 | 46 | 2870 | 52 | 7 | 13.4615 | |
| hfeng-pmm2 | SNP | tv | map_l250_m2_e1 | het | 97.7868 | 97.8117 | 97.7620 | 90.3675 | 1922 | 43 | 1922 | 44 | 3 | 6.8182 | |
| hfeng-pmm2 | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9577 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l250_m2_e1 | homalt | 99.4201 | 99.6829 | 99.1588 | 88.2127 | 943 | 3 | 943 | 8 | 4 | 50.0000 | |
| hfeng-pmm2 | SNP | tv | map_siren | * | 99.6626 | 99.6995 | 99.6257 | 59.0414 | 45792 | 138 | 45784 | 172 | 23 | 13.3721 | |
| hfeng-pmm2 | SNP | tv | map_siren | het | 99.5196 | 99.5806 | 99.4588 | 60.5491 | 28489 | 120 | 28484 | 155 | 14 | 9.0323 | |
| hfeng-pmm2 | SNP | tv | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_siren | homalt | 99.9014 | 99.9014 | 99.9014 | 56.1199 | 17223 | 17 | 17220 | 17 | 9 | 52.9412 | |
| hfeng-pmm2 | SNP | tv | segdup | * | 99.6780 | 99.8125 | 99.5439 | 91.3819 | 8516 | 16 | 8512 | 39 | 4 | 10.2564 | |