PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
30301-30350 / 86044 show all
hfeng-pmm2SNPtimap_l150_m0_e0*
98.9345
99.2367
98.6341
81.2825
780160779910813
12.0370
hfeng-pmm2SNPtimap_l150_m0_e0het
98.5736
98.9994
98.1514
83.2987
5046515044958
8.4211
hfeng-pmm2SNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
90.3226
30300
hfeng-pmm2SNPtimap_l150_m0_e0homalt
99.6019
99.6740
99.5298
75.8368
275292752135
38.4615
hfeng-pmm2SNPtimap_l150_m1_e0*
99.2981
99.4065
99.1899
76.2408
195951171959116020
12.5000
hfeng-pmm2SNPtimap_l150_m1_e0het
99.0031
99.1673
98.8394
78.5331
122671031226314413
9.0278
hfeng-pmm2SNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
76.5625
1501500
hfeng-pmm2SNPtimap_l150_m1_e0homalt
99.7953
99.8089
99.7817
70.9972
7313147313167
43.7500
hfeng-pmm2SNPtimap_l150_m2_e0*
99.3133
99.4247
99.2021
77.6100
203941182039016420
12.1951
hfeng-pmm2SNPtimap_l150_m2_e0het
99.0233
99.1926
98.8546
79.5912
127771041277314813
8.7838
hfeng-pmm2SNPtimap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
79.7297
1501500
hfeng-pmm2SNPtimap_l150_m2_e0homalt
99.8031
99.8162
99.7900
73.1902
7602147602167
43.7500
hfeng-pmm2SNPtimap_l150_m2_e1*
99.3155
99.4306
99.2007
77.6747
206051182060116620
12.0482
hfeng-pmm2SNPtimap_l150_m2_e1het
99.0257
99.2009
98.8512
79.6610
129111041290715013
8.6667
hfeng-pmm2SNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
79.7297
1501500
hfeng-pmm2SNPtimap_l150_m2_e1homalt
99.8050
99.8180
99.7921
73.2339
7679147679167
43.7500
hfeng-pmm2SNPtimap_l250_m0_e0*
98.1118
98.6131
97.6156
93.5472
1351191351335
15.1515
hfeng-pmm2SNPtimap_l250_m0_e0het
97.6596
98.2869
97.0402
94.0240
91816918283
10.7143
hfeng-pmm2SNPtimap_l250_m0_e0hetalt
0.0000
100.0000
00000
hfeng-pmm2SNPtimap_l250_m0_e0homalt
99.0847
99.3119
98.8584
92.1786
433343352
40.0000
hfeng-pmm2SNPtimap_l250_m1_e0*
98.7163
99.0828
98.3525
89.4985
4537424537769
11.8421
hfeng-pmm2SNPtimap_l250_m1_e0het
98.2909
98.8208
97.7667
90.5159
2933352933677
10.4478
hfeng-pmm2SNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
88.8889
40400
hfeng-pmm2SNPtimap_l250_m1_e0homalt
99.5025
99.5644
99.4406
86.8749
16007160092
22.2222
hfeng-pmm2SNPtimap_l250_m2_e0*
98.8259
99.1613
98.4927
89.9448
4966424966769
11.8421
hfeng-pmm2SNPtimap_l250_m2_e0het
98.4404
98.9244
97.9610
90.8174
3219353219677
10.4478
hfeng-pmm2SNPtimap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
87.5000
50500
hfeng-pmm2SNPtimap_l250_m2_e0homalt
99.5429
99.5998
99.4860
87.7706
17427174292
22.2222
hfeng-pmm2SNPtimap_l250_m2_e1*
98.8122
99.1529
98.4739
90.0047
5033435033789
11.5385
hfeng-pmm2SNPtimap_l250_m2_e1het
98.4165
98.9088
97.9292
90.8817
3263363263697
10.1449
hfeng-pmm2SNPtimap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
87.5000
50500
hfeng-pmm2SNPtimap_l250_m2_e1homalt
99.5488
99.6050
99.4927
87.8092
17657176592
22.2222
hfeng-pmm2SNPtimap_siren*
99.6860
99.6642
99.7079
54.6933
10001833710000329339
13.3106
hfeng-pmm2SNPtimap_sirenhet
99.5502
99.5223
99.5781
56.1068
620842986207526319
7.2243
hfeng-pmm2SNPtimap_sirenhetalt
99.1150
98.2456
100.0000
73.3333
5615600
hfeng-pmm2SNPtimap_sirenhomalt
99.9103
99.8998
99.9208
52.1071
3787838378723020
66.6667
hfeng-pmm2SNPtisegdup*
99.6754
99.8157
99.5355
89.6871
195013619499919
9.8901
hfeng-pmm2SNPtisegduphet
99.5229
99.7257
99.3210
90.4269
119973311995820
0.0000
hfeng-pmm2SNPtisegduphetalt
100.0000
100.0000
100.0000
98.9011
20200
hfeng-pmm2SNPtisegduphomalt
99.9201
99.9600
99.8802
88.1936
75023750299
100.0000
hfeng-pmm2SNPtisegdupwithalt*
0.0000
100.0000
00000
hfeng-pmm2SNPtisegdupwithalthet
0.0000
100.0000
00000
hfeng-pmm2SNPtisegdupwithalthetalt
0.0000
100.0000
00000
hfeng-pmm2SNPtisegdupwithalthomalt
0.0000
100.0000
00000
hfeng-pmm2SNPtitech_badpromoters*
98.8235
98.8235
98.8235
44.8052
8418411
100.0000
hfeng-pmm2SNPtitech_badpromotershet
98.8506
97.7273
100.0000
46.2500
4314300
hfeng-pmm2SNPtitech_badpromotershetalt
0.0000
0.0000
0.0000
00000
hfeng-pmm2SNPtitech_badpromotershomalt
98.7952
100.0000
97.6190
43.2432
4104111
100.0000
hfeng-pmm2SNPtv**
99.9268
99.9066
99.9471
21.6564
96878490696870551342
8.1871
hfeng-pmm2SNPtv*het
99.8886
99.8560
99.9212
22.0414
59084485259077046618
3.8627