PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30301-30350 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | ti | map_l150_m0_e0 | * | 98.9345 | 99.2367 | 98.6341 | 81.2825 | 7801 | 60 | 7799 | 108 | 13 | 12.0370 | |
| hfeng-pmm2 | SNP | ti | map_l150_m0_e0 | het | 98.5736 | 98.9994 | 98.1514 | 83.2987 | 5046 | 51 | 5044 | 95 | 8 | 8.4211 | |
| hfeng-pmm2 | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3226 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l150_m0_e0 | homalt | 99.6019 | 99.6740 | 99.5298 | 75.8368 | 2752 | 9 | 2752 | 13 | 5 | 38.4615 | |
| hfeng-pmm2 | SNP | ti | map_l150_m1_e0 | * | 99.2981 | 99.4065 | 99.1899 | 76.2408 | 19595 | 117 | 19591 | 160 | 20 | 12.5000 | |
| hfeng-pmm2 | SNP | ti | map_l150_m1_e0 | het | 99.0031 | 99.1673 | 98.8394 | 78.5331 | 12267 | 103 | 12263 | 144 | 13 | 9.0278 | |
| hfeng-pmm2 | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.5625 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l150_m1_e0 | homalt | 99.7953 | 99.8089 | 99.7817 | 70.9972 | 7313 | 14 | 7313 | 16 | 7 | 43.7500 | |
| hfeng-pmm2 | SNP | ti | map_l150_m2_e0 | * | 99.3133 | 99.4247 | 99.2021 | 77.6100 | 20394 | 118 | 20390 | 164 | 20 | 12.1951 | |
| hfeng-pmm2 | SNP | ti | map_l150_m2_e0 | het | 99.0233 | 99.1926 | 98.8546 | 79.5912 | 12777 | 104 | 12773 | 148 | 13 | 8.7838 | |
| hfeng-pmm2 | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.7297 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l150_m2_e0 | homalt | 99.8031 | 99.8162 | 99.7900 | 73.1902 | 7602 | 14 | 7602 | 16 | 7 | 43.7500 | |
| hfeng-pmm2 | SNP | ti | map_l150_m2_e1 | * | 99.3155 | 99.4306 | 99.2007 | 77.6747 | 20605 | 118 | 20601 | 166 | 20 | 12.0482 | |
| hfeng-pmm2 | SNP | ti | map_l150_m2_e1 | het | 99.0257 | 99.2009 | 98.8512 | 79.6610 | 12911 | 104 | 12907 | 150 | 13 | 8.6667 | |
| hfeng-pmm2 | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.7297 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l150_m2_e1 | homalt | 99.8050 | 99.8180 | 99.7921 | 73.2339 | 7679 | 14 | 7679 | 16 | 7 | 43.7500 | |
| hfeng-pmm2 | SNP | ti | map_l250_m0_e0 | * | 98.1118 | 98.6131 | 97.6156 | 93.5472 | 1351 | 19 | 1351 | 33 | 5 | 15.1515 | |
| hfeng-pmm2 | SNP | ti | map_l250_m0_e0 | het | 97.6596 | 98.2869 | 97.0402 | 94.0240 | 918 | 16 | 918 | 28 | 3 | 10.7143 | |
| hfeng-pmm2 | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | ti | map_l250_m0_e0 | homalt | 99.0847 | 99.3119 | 98.8584 | 92.1786 | 433 | 3 | 433 | 5 | 2 | 40.0000 | |
| hfeng-pmm2 | SNP | ti | map_l250_m1_e0 | * | 98.7163 | 99.0828 | 98.3525 | 89.4985 | 4537 | 42 | 4537 | 76 | 9 | 11.8421 | |
| hfeng-pmm2 | SNP | ti | map_l250_m1_e0 | het | 98.2909 | 98.8208 | 97.7667 | 90.5159 | 2933 | 35 | 2933 | 67 | 7 | 10.4478 | |
| hfeng-pmm2 | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l250_m1_e0 | homalt | 99.5025 | 99.5644 | 99.4406 | 86.8749 | 1600 | 7 | 1600 | 9 | 2 | 22.2222 | |
| hfeng-pmm2 | SNP | ti | map_l250_m2_e0 | * | 98.8259 | 99.1613 | 98.4927 | 89.9448 | 4966 | 42 | 4966 | 76 | 9 | 11.8421 | |
| hfeng-pmm2 | SNP | ti | map_l250_m2_e0 | het | 98.4404 | 98.9244 | 97.9610 | 90.8174 | 3219 | 35 | 3219 | 67 | 7 | 10.4478 | |
| hfeng-pmm2 | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l250_m2_e0 | homalt | 99.5429 | 99.5998 | 99.4860 | 87.7706 | 1742 | 7 | 1742 | 9 | 2 | 22.2222 | |
| hfeng-pmm2 | SNP | ti | map_l250_m2_e1 | * | 98.8122 | 99.1529 | 98.4739 | 90.0047 | 5033 | 43 | 5033 | 78 | 9 | 11.5385 | |
| hfeng-pmm2 | SNP | ti | map_l250_m2_e1 | het | 98.4165 | 98.9088 | 97.9292 | 90.8817 | 3263 | 36 | 3263 | 69 | 7 | 10.1449 | |
| hfeng-pmm2 | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l250_m2_e1 | homalt | 99.5488 | 99.6050 | 99.4927 | 87.8092 | 1765 | 7 | 1765 | 9 | 2 | 22.2222 | |
| hfeng-pmm2 | SNP | ti | map_siren | * | 99.6860 | 99.6642 | 99.7079 | 54.6933 | 100018 | 337 | 100003 | 293 | 39 | 13.3106 | |
| hfeng-pmm2 | SNP | ti | map_siren | het | 99.5502 | 99.5223 | 99.5781 | 56.1068 | 62084 | 298 | 62075 | 263 | 19 | 7.2243 | |
| hfeng-pmm2 | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 73.3333 | 56 | 1 | 56 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_siren | homalt | 99.9103 | 99.8998 | 99.9208 | 52.1071 | 37878 | 38 | 37872 | 30 | 20 | 66.6667 | |
| hfeng-pmm2 | SNP | ti | segdup | * | 99.6754 | 99.8157 | 99.5355 | 89.6871 | 19501 | 36 | 19499 | 91 | 9 | 9.8901 | |
| hfeng-pmm2 | SNP | ti | segdup | het | 99.5229 | 99.7257 | 99.3210 | 90.4269 | 11997 | 33 | 11995 | 82 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.9011 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | segdup | homalt | 99.9201 | 99.9600 | 99.8802 | 88.1936 | 7502 | 3 | 7502 | 9 | 9 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | ti | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 44.8052 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | tech_badpromoters | het | 98.8506 | 97.7273 | 100.0000 | 46.2500 | 43 | 1 | 43 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 43.2432 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | * | * | 99.9268 | 99.9066 | 99.9471 | 21.6564 | 968784 | 906 | 968705 | 513 | 42 | 8.1871 | |
| hfeng-pmm2 | SNP | tv | * | het | 99.8886 | 99.8560 | 99.9212 | 22.0414 | 590844 | 852 | 590770 | 466 | 18 | 3.8627 | |