PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 3 4 5 6 7 8 9 10 ... 1720 1721 » 251-300 / 86044 show all
rpoplin-dv42	SNP	ti	map_l125_m2_e0	het	99.1665	98.9669	99.3669	71.7774	18681	195	18677	119	74	62.1849
rpoplin-dv42	SNP	ti	map_l125_m2_e0	*	99.3062	99.1044	99.5088	70.7721	29987	271	29983	148	102	68.9189
rpoplin-dv42	SNP	ti	map_l125_m1_e0	homalt	99.5372	99.3119	99.7635	66.3061	10969	76	10969	26	25	96.1538
rpoplin-dv42	SNP	ti	map_l125_m1_e0	hetalt	96.0000	100.0000	92.3077	81.6901	24	0	24	2	2	100.0000
rpoplin-dv42	SNP	ti	map_l125_m1_e0	het	99.1441	98.9434	99.3457	70.2153	18073	193	18069	119	74	62.1849
rpoplin-dv42	SNP	ti	map_l125_m1_e0	*	99.2894	99.0830	99.4967	68.8733	29066	269	29062	147	101	68.7075
rpoplin-dv42	SNP	ti	map_l125_m0_e0	homalt	99.2059	98.7531	99.6629	68.6730	4435	56	4435	15	14	93.3333
rpoplin-dv42	SNP	ti	map_l125_m0_e0	hetalt	88.8889	100.0000	80.0000	86.3014	8	0	8	2	2	100.0000
rpoplin-dv42	SNP	ti	map_l125_m0_e0	het	98.8184	98.6930	98.9442	74.5223	8155	108	8153	87	54	62.0690
rpoplin-dv42	SNP	ti	map_l125_m0_e0	*	98.9475	98.7149	99.1811	72.7585	12598	164	12596	104	70	67.3077
rpoplin-dv42	SNP	ti	map_l100_m2_e1	homalt	99.6670	99.5404	99.7940	62.9692	18409	85	18410	38	36	94.7368
rpoplin-dv42	SNP	ti	map_l100_m2_e1	hetalt	96.8750	100.0000	93.9394	83.9024	31	0	31	2	2	100.0000
rpoplin-dv42	SNP	ti	map_l100_m2_e1	het	99.3494	99.1473	99.5523	65.6527	30696	264	30688	138	83	60.1449
rpoplin-dv42	SNP	ti	map_l100_m2_e1	*	99.4666	99.2947	99.6390	64.7230	49136	349	49129	178	121	67.9775
rpoplin-dv42	SNP	ti	map_l100_m2_e0	homalt	99.6664	99.5412	99.7919	62.9736	18225	84	18226	38	36	94.7368
rpoplin-dv42	SNP	ti	map_l100_m2_e0	hetalt	96.7742	100.0000	93.7500	84.0796	30	0	30	2	2	100.0000
rpoplin-dv42	SNP	ti	map_l100_m2_e0	het	99.3487	99.1444	99.5539	65.6465	30360	262	30352	136	82	60.2941
rpoplin-dv42	SNP	ti	map_l100_m2_e0	*	99.4660	99.2933	99.6392	64.7198	48615	346	48608	176	120	68.1818
rpoplin-dv42	SNP	ti	map_l100_m1_e0	homalt	99.6655	99.5323	99.7990	60.4404	17876	84	17877	36	34	94.4444
rpoplin-dv42	SNP	ti	map_l100_m1_e0	hetalt	96.6667	100.0000	93.5484	82.7778	29	0	29	2	2	100.0000
rpoplin-dv42	SNP	ti	map_l100_m1_e0	het	99.3390	99.1350	99.5438	63.8948	29683	259	29675	136	82	60.2941
rpoplin-dv42	SNP	ti	map_l100_m1_e0	*	99.4597	99.2844	99.6356	62.6996	47588	343	47581	174	118	67.8161
rpoplin-dv42	SNP	ti	map_l100_m0_e0	homalt	99.4451	99.1253	99.7670	62.0330	7706	68	7706	18	17	94.4444
rpoplin-dv42	SNP	ti	map_l100_m0_e0	hetalt	93.3333	100.0000	87.5000	82.4176	14	0	14	2	2	100.0000
rpoplin-dv42	SNP	ti	map_l100_m0_e0	het	99.0327	98.8486	99.2174	68.2957	13822	161	13819	109	66	60.5505
rpoplin-dv42	SNP	ti	map_l100_m0_e0	*	99.1759	98.9481	99.4047	66.3363	21542	229	21539	129	85	65.8915
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_triTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_triTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_triTR_gt200	het		0.0000		100.0000	0	0	0	0	0
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_triTR_gt200	*		0.0000		100.0000	0	0	0	0	0
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	95.5556	2	0	2	0	0
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	het	80.0000	66.6667	100.0000	96.1538	4	2	4	0	0
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	*	85.7143	75.0000	100.0000	95.9732	6	2	6	0	0
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9299	99.9299	99.9299	28.6857	1426	1	1426	1	1	100.0000
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	hetalt		0.0000		100.0000	0	1	0	0	0
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.8991	99.8789	99.9192	29.1154	2475	3	2474	2	1	50.0000
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.8976	99.8720	99.9231	28.9976	3901	5	3900	3	2	66.6667
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000		100.0000	0	0	0	0	0
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000		100.0000	0	0	0	0	0
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000		100.0000	0	0	0	0	0
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	100.0000	100.0000	100.0000	92.5156	35	0	36	0	0
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	het	93.0824	92.4242	93.7500	93.8164	61	5	60	4	3	75.0000
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	*	95.5224	95.0495	96.0000	93.4037	96	5	96	4	3	75.0000
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9248	99.9248	99.9248	37.2719	3984	3	3984	3	3	100.0000
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	100.0000	100.0000	100.0000	66.6667	1	0	1	0	0
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.8665	99.8517	99.8813	39.6598	6734	10	6732	8	2	25.0000
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.8882	99.8789	99.8975	38.7986	10719	13	10717	11	5	45.4545

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge