PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
251-300 / 86044 show all
rpoplin-dv42SNPtimap_l125_m2_e0het
99.1665
98.9669
99.3669
71.7774
186811951867711974
62.1849
rpoplin-dv42SNPtimap_l125_m2_e0*
99.3062
99.1044
99.5088
70.7721
2998727129983148102
68.9189
rpoplin-dv42SNPtimap_l125_m1_e0homalt
99.5372
99.3119
99.7635
66.3061
1096976109692625
96.1538
rpoplin-dv42SNPtimap_l125_m1_e0hetalt
96.0000
100.0000
92.3077
81.6901
2402422
100.0000
rpoplin-dv42SNPtimap_l125_m1_e0het
99.1441
98.9434
99.3457
70.2153
180731931806911974
62.1849
rpoplin-dv42SNPtimap_l125_m1_e0*
99.2894
99.0830
99.4967
68.8733
2906626929062147101
68.7075
rpoplin-dv42SNPtimap_l125_m0_e0homalt
99.2059
98.7531
99.6629
68.6730
44355644351514
93.3333
rpoplin-dv42SNPtimap_l125_m0_e0hetalt
88.8889
100.0000
80.0000
86.3014
80822
100.0000
rpoplin-dv42SNPtimap_l125_m0_e0het
98.8184
98.6930
98.9442
74.5223
815510881538754
62.0690
rpoplin-dv42SNPtimap_l125_m0_e0*
98.9475
98.7149
99.1811
72.7585
125981641259610470
67.3077
rpoplin-dv42SNPtimap_l100_m2_e1homalt
99.6670
99.5404
99.7940
62.9692
1840985184103836
94.7368
rpoplin-dv42SNPtimap_l100_m2_e1hetalt
96.8750
100.0000
93.9394
83.9024
3103122
100.0000
rpoplin-dv42SNPtimap_l100_m2_e1het
99.3494
99.1473
99.5523
65.6527
306962643068813883
60.1449
rpoplin-dv42SNPtimap_l100_m2_e1*
99.4666
99.2947
99.6390
64.7230
4913634949129178121
67.9775
rpoplin-dv42SNPtimap_l100_m2_e0homalt
99.6664
99.5412
99.7919
62.9736
1822584182263836
94.7368
rpoplin-dv42SNPtimap_l100_m2_e0hetalt
96.7742
100.0000
93.7500
84.0796
3003022
100.0000
rpoplin-dv42SNPtimap_l100_m2_e0het
99.3487
99.1444
99.5539
65.6465
303602623035213682
60.2941
rpoplin-dv42SNPtimap_l100_m2_e0*
99.4660
99.2933
99.6392
64.7198
4861534648608176120
68.1818
rpoplin-dv42SNPtimap_l100_m1_e0homalt
99.6655
99.5323
99.7990
60.4404
1787684178773634
94.4444
rpoplin-dv42SNPtimap_l100_m1_e0hetalt
96.6667
100.0000
93.5484
82.7778
2902922
100.0000
rpoplin-dv42SNPtimap_l100_m1_e0het
99.3390
99.1350
99.5438
63.8948
296832592967513682
60.2941
rpoplin-dv42SNPtimap_l100_m1_e0*
99.4597
99.2844
99.6356
62.6996
4758834347581174118
67.8161
rpoplin-dv42SNPtimap_l100_m0_e0homalt
99.4451
99.1253
99.7670
62.0330
77066877061817
94.4444
rpoplin-dv42SNPtimap_l100_m0_e0hetalt
93.3333
100.0000
87.5000
82.4176
1401422
100.0000
rpoplin-dv42SNPtimap_l100_m0_e0het
99.0327
98.8486
99.2174
68.2957
138221611381910966
60.5505
rpoplin-dv42SNPtimap_l100_m0_e0*
99.1759
98.9481
99.4047
66.3363
215422292153912985
65.8915
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_gt200het
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_gt200*
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
95.5556
20200
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_51to200het
80.0000
66.6667
100.0000
96.1538
42400
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_51to200*
85.7143
75.0000
100.0000
95.9732
62600
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9299
99.9299
99.9299
28.6857
14261142611
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_11to50het
99.8991
99.8789
99.9192
29.1154
24753247421
50.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8976
99.8720
99.9231
28.9976
39015390032
66.6667
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
92.5156
3503600
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_51to200het
93.0824
92.4242
93.7500
93.8164
6156043
75.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_51to200*
95.5224
95.0495
96.0000
93.4037
9659643
75.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9248
99.9248
99.9248
37.2719
39843398433
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.8665
99.8517
99.8813
39.6598
673410673282
25.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.8882
99.8789
99.8975
38.7986
107191310717115
45.4545