PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29801-29850 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | * | map_l100_m2_e0 | homalt | 99.2469 | 99.2863 | 99.2076 | 82.1525 | 1252 | 9 | 1252 | 10 | 4 | 40.0000 | |
| hfeng-pmm3 | INDEL | * | map_l100_m2_e1 | * | 98.5982 | 98.2428 | 98.9561 | 83.4763 | 3690 | 66 | 3697 | 39 | 9 | 23.0769 | |
| hfeng-pmm3 | INDEL | * | map_l100_m2_e1 | het | 98.5037 | 98.2501 | 98.7586 | 83.8596 | 2302 | 41 | 2307 | 29 | 5 | 17.2414 | |
| hfeng-pmm3 | INDEL | * | map_l100_m2_e1 | hetalt | 93.5484 | 87.8788 | 100.0000 | 87.1739 | 116 | 16 | 118 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l100_m2_e1 | homalt | 99.2587 | 99.2974 | 99.2200 | 82.2364 | 1272 | 9 | 1272 | 10 | 4 | 40.0000 | |
| hfeng-pmm3 | INDEL | * | map_l125_m0_e0 | * | 98.0793 | 98.2993 | 97.8604 | 87.9462 | 867 | 15 | 869 | 19 | 5 | 26.3158 | |
| hfeng-pmm3 | INDEL | * | map_l125_m0_e0 | het | 97.7062 | 97.7853 | 97.6271 | 88.4968 | 574 | 13 | 576 | 14 | 2 | 14.2857 | |
| hfeng-pmm3 | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0893 | 11 | 0 | 11 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l125_m0_e0 | homalt | 98.7741 | 99.2958 | 98.2578 | 85.7498 | 282 | 2 | 282 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | * | map_l125_m1_e0 | * | 98.6235 | 98.5287 | 98.7186 | 85.1274 | 2076 | 31 | 2080 | 27 | 6 | 22.2222 | |
| hfeng-pmm3 | INDEL | * | map_l125_m1_e0 | het | 98.2769 | 98.1273 | 98.4270 | 85.5800 | 1310 | 25 | 1314 | 21 | 3 | 14.2857 | |
| hfeng-pmm3 | INDEL | * | map_l125_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 92.2131 | 38 | 2 | 38 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l125_m1_e0 | homalt | 99.3179 | 99.4536 | 99.1826 | 83.3974 | 728 | 4 | 728 | 6 | 3 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | map_l125_m2_e0 | * | 98.5876 | 98.4517 | 98.7238 | 86.1051 | 2162 | 34 | 2166 | 28 | 6 | 21.4286 | |
| hfeng-pmm3 | INDEL | * | map_l125_m2_e0 | het | 98.2731 | 98.0590 | 98.4881 | 86.4620 | 1364 | 27 | 1368 | 21 | 3 | 14.2857 | |
| hfeng-pmm3 | INDEL | * | map_l125_m2_e0 | hetalt | 96.2963 | 92.8571 | 100.0000 | 93.1338 | 39 | 3 | 39 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l125_m2_e0 | homalt | 99.2806 | 99.4758 | 99.0862 | 84.5627 | 759 | 4 | 759 | 7 | 3 | 42.8571 | |
| hfeng-pmm3 | INDEL | * | map_l125_m2_e1 | * | 98.5832 | 98.4270 | 98.7399 | 86.2184 | 2190 | 35 | 2194 | 28 | 6 | 21.4286 | |
| hfeng-pmm3 | INDEL | * | map_l125_m2_e1 | het | 98.2939 | 98.0824 | 98.5064 | 86.5724 | 1381 | 27 | 1385 | 21 | 3 | 14.2857 | |
| hfeng-pmm3 | INDEL | * | map_l125_m2_e1 | hetalt | 95.1220 | 90.6977 | 100.0000 | 93.2642 | 39 | 4 | 39 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l125_m2_e1 | homalt | 99.2908 | 99.4832 | 99.0991 | 84.6836 | 770 | 4 | 770 | 7 | 3 | 42.8571 | |
| hfeng-pmm3 | INDEL | * | map_l150_m0_e0 | * | 97.7834 | 98.4436 | 97.1319 | 90.8917 | 506 | 8 | 508 | 15 | 4 | 26.6667 | |
| hfeng-pmm3 | INDEL | * | map_l150_m0_e0 | het | 97.3854 | 97.9472 | 96.8300 | 91.4173 | 334 | 7 | 336 | 11 | 1 | 9.0909 | |
| hfeng-pmm3 | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.6429 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l150_m0_e0 | homalt | 98.4894 | 99.3902 | 97.6048 | 89.0921 | 163 | 1 | 163 | 4 | 3 | 75.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m1_e0 | * | 98.2484 | 98.3558 | 98.1413 | 87.8949 | 1316 | 22 | 1320 | 25 | 6 | 24.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m1_e0 | het | 97.9024 | 98.0117 | 97.7933 | 88.3397 | 838 | 17 | 842 | 19 | 3 | 15.7895 | |
| hfeng-pmm3 | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.4904 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l150_m1_e0 | homalt | 98.9201 | 99.1342 | 98.7069 | 86.2069 | 458 | 4 | 458 | 6 | 3 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m2_e0 | * | 98.2631 | 98.2955 | 98.2307 | 88.7365 | 1384 | 24 | 1388 | 25 | 6 | 24.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m2_e0 | het | 97.9638 | 98.0132 | 97.9144 | 88.9709 | 888 | 18 | 892 | 19 | 3 | 15.7895 | |
| hfeng-pmm3 | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 95.2607 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | segdupwithalt | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | segdupwithalt | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | segdupwithalt | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | C1_5 | * | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||