PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29751-29800 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7933 | 96.5102 | 99.1110 | 60.0852 | 15210 | 550 | 15051 | 135 | 117 | 86.6667 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.4355 | 95.0263 | 99.9701 | 33.2469 | 9954 | 521 | 10036 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5421 | 99.7007 | 99.3840 | 44.2028 | 10326 | 31 | 10326 | 64 | 61 | 95.3125 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.7851 | 78.2485 | 92.5134 | 54.4520 | 1644 | 457 | 1557 | 126 | 122 | 96.8254 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.0432 | 83.2653 | 73.4375 | 79.0713 | 408 | 82 | 235 | 85 | 83 | 97.6471 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 83.9311 | 72.3642 | 99.8993 | 31.6116 | 906 | 346 | 992 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.5350 | 91.9220 | 89.1892 | 48.1793 | 330 | 29 | 330 | 40 | 38 | 95.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7891 | 99.6426 | 99.9361 | 57.3259 | 28159 | 101 | 28161 | 18 | 11 | 61.1111 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7438 | 99.5435 | 99.9450 | 57.4906 | 16354 | 75 | 16352 | 9 | 2 | 22.2222 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.4820 | 97.0093 | 100.0000 | 73.5592 | 519 | 16 | 523 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9159 | 99.9115 | 99.9203 | 55.8220 | 11286 | 10 | 11286 | 9 | 9 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 87.3170 | 80.6452 | 95.1923 | 99.9131 | 100 | 24 | 99 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.7839 | 72.4138 | 93.9394 | 99.8971 | 63 | 24 | 62 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8696 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9492 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2201 | 98.6457 | 99.8013 | 56.9126 | 19593 | 269 | 19586 | 39 | 21 | 53.8462 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.0338 | 98.2985 | 99.7802 | 60.1845 | 10919 | 189 | 10893 | 24 | 6 | 25.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7925 | 97.6137 | 100.0000 | 42.2217 | 2618 | 64 | 2637 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7447 | 99.7365 | 99.7529 | 55.2418 | 6056 | 16 | 6056 | 15 | 15 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.8189 | 94.9153 | 98.8005 | 65.6974 | 2520 | 135 | 2471 | 30 | 22 | 73.3333 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.4421 | 93.6983 | 97.2521 | 80.7365 | 907 | 61 | 814 | 23 | 16 | 69.5652 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.9869 | 94.2259 | 99.9146 | 34.2135 | 1126 | 69 | 1170 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.8832 | 98.9837 | 98.7830 | 57.7187 | 487 | 5 | 487 | 6 | 5 | 83.3333 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4784 | 99.1386 | 99.8206 | 46.1563 | 6675 | 58 | 6677 | 12 | 6 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2169 | 98.7151 | 99.7238 | 50.1102 | 3611 | 47 | 3611 | 10 | 4 | 40.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5101 | 99.0249 | 100.0000 | 30.0763 | 914 | 9 | 916 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9071 | 99.9071 | 99.9071 | 44.1764 | 2150 | 2 | 2150 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.1596 | 93.2432 | 97.1564 | 60.5607 | 207 | 15 | 205 | 6 | 4 | 66.6667 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.5285 | 88.0000 | 91.1111 | 83.4559 | 44 | 6 | 41 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.2656 | 92.8000 | 100.0000 | 29.5181 | 116 | 9 | 117 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.9167 | 100.0000 | 95.9184 | 49.4845 | 47 | 0 | 47 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | map_l100_m0_e0 | * | 98.2754 | 98.3365 | 98.2143 | 84.4120 | 1537 | 26 | 1540 | 28 | 6 | 21.4286 | |
| hfeng-pmm3 | INDEL | * | map_l100_m0_e0 | het | 98.1428 | 98.2370 | 98.0488 | 85.0974 | 1003 | 18 | 1005 | 20 | 2 | 10.0000 | |
| hfeng-pmm3 | INDEL | * | map_l100_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 90.9621 | 30 | 3 | 31 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l100_m0_e0 | homalt | 98.7267 | 99.0177 | 98.4375 | 81.9591 | 504 | 5 | 504 | 8 | 4 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | map_l100_m1_e0 | * | 98.6300 | 98.2989 | 98.9633 | 82.3910 | 3525 | 61 | 3532 | 37 | 9 | 24.3243 | |
| hfeng-pmm3 | INDEL | * | map_l100_m1_e0 | het | 98.5219 | 98.2998 | 98.7450 | 82.8675 | 2197 | 38 | 2203 | 28 | 5 | 17.8571 | |
| hfeng-pmm3 | INDEL | * | map_l100_m1_e0 | hetalt | 94.0171 | 88.7097 | 100.0000 | 86.3804 | 110 | 14 | 111 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l100_m1_e0 | homalt | 99.2665 | 99.2665 | 99.2665 | 80.9205 | 1218 | 9 | 1218 | 9 | 4 | 44.4444 | |
| hfeng-pmm3 | INDEL | * | map_l100_m2_e0 | * | 98.6017 | 98.2670 | 98.9388 | 83.3913 | 3629 | 64 | 3636 | 39 | 9 | 23.0769 | |
| hfeng-pmm3 | INDEL | * | map_l100_m2_e0 | het | 98.4803 | 98.2228 | 98.7391 | 83.7628 | 2266 | 41 | 2271 | 29 | 5 | 17.2414 | |
| hfeng-pmm3 | INDEL | * | map_l100_m2_e0 | hetalt | 94.0678 | 88.8000 | 100.0000 | 87.3176 | 111 | 14 | 113 | 0 | 0 | ||