PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29651-29700 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | * | * | * | 99.3628 | 99.0161 | 99.7120 | 56.9384 | 341152 | 3390 | 341013 | 985 | 798 | 81.0152 | |
| hfeng-pmm3 | INDEL | * | * | het | 99.4705 | 99.1923 | 99.7504 | 58.0356 | 192565 | 1568 | 192191 | 481 | 313 | 65.0728 | |
| hfeng-pmm3 | INDEL | * | * | hetalt | 96.7703 | 93.7869 | 99.9498 | 57.3944 | 23669 | 1568 | 23894 | 12 | 10 | 83.3333 | |
| hfeng-pmm3 | INDEL | * | * | homalt | 99.7023 | 99.7971 | 99.6077 | 55.0410 | 124918 | 254 | 124928 | 492 | 475 | 96.5447 | |
| hfeng-pmm3 | INDEL | * | HG002complexvar | * | 99.1462 | 98.5027 | 99.7982 | 57.0316 | 75786 | 1152 | 75648 | 153 | 115 | 75.1634 | |
| hfeng-pmm3 | INDEL | * | HG002complexvar | het | 98.8973 | 97.9724 | 99.8399 | 56.4422 | 45275 | 937 | 44901 | 72 | 42 | 58.3333 | |
| hfeng-pmm3 | INDEL | * | HG002complexvar | hetalt | 97.4347 | 95.2149 | 99.7604 | 68.3328 | 3522 | 177 | 3748 | 9 | 7 | 77.7778 | |
| hfeng-pmm3 | INDEL | * | HG002complexvar | homalt | 99.7967 | 99.8594 | 99.7340 | 55.8371 | 26989 | 38 | 26999 | 72 | 66 | 91.6667 | |
| hfeng-pmm3 | INDEL | * | HG002compoundhet | * | 94.8142 | 92.3999 | 97.3580 | 58.7757 | 27683 | 2277 | 27564 | 748 | 724 | 96.7914 | |
| hfeng-pmm3 | INDEL | * | HG002compoundhet | het | 86.9738 | 82.7064 | 91.7055 | 77.8323 | 3386 | 708 | 3151 | 285 | 268 | 94.0351 | |
| hfeng-pmm3 | INDEL | * | HG002compoundhet | hetalt | 96.7848 | 93.7847 | 99.9831 | 50.6733 | 23615 | 1565 | 23731 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | HG002compoundhet | homalt | 74.6579 | 99.4169 | 59.7721 | 77.4506 | 682 | 4 | 682 | 459 | 454 | 98.9107 | |
| hfeng-pmm3 | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9223 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9272 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8325 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9254 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | func_cds | * | 99.6618 | 99.3258 | 100.0000 | 42.1121 | 442 | 3 | 444 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | func_cds | het | 99.5305 | 99.0654 | 100.0000 | 46.0957 | 212 | 2 | 214 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 63.6364 | 4 | 1 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 37.0474 | 226 | 0 | 226 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.2661 | 91.3134 | 97.4160 | 66.6942 | 9198 | 875 | 9048 | 240 | 203 | 84.5833 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.1239 | 92.6980 | 95.5943 | 77.1597 | 3745 | 295 | 3450 | 159 | 125 | 78.6164 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.6249 | 86.3494 | 99.8841 | 40.2114 | 3302 | 522 | 3447 | 4 | 4 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.9574 | 97.3744 | 96.5440 | 64.7133 | 2151 | 58 | 2151 | 77 | 74 | 96.1039 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.0000 | 95.0000 | 95.0000 | 99.3115 | 19 | 1 | 19 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 95.6522 | 91.6667 | 100.0000 | 99.3844 | 11 | 1 | 11 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0297 | 3 | 0 | 3 | 0 | 0 | ||