PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
2901-2950 / 86044 show all
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8483
99.7230
99.9740
62.7618
11520321152033
100.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_11to50*
98.3834
96.8782
99.9360
67.6999
4686151468633
100.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_11to50het
97.5443
95.2668
99.9334
69.5454
2999149299922
100.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
94.1176
10100
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.9111
99.8815
99.9407
63.6892
16862168611
100.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_51to200*
89.6552
81.2500
100.0000
97.7816
1331300
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_51to200het
82.3529
70.0000
100.0000
98.2544
73700
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.7391
60600
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.8403
99.7607
99.9201
44.0150
625315625353
60.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7906
99.6556
99.9260
45.0901
405114405131
33.3333
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.7778
20200
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9319
99.9546
99.9092
41.8384
22001220022
100.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.5098
99.3105
99.7100
37.0828
106587410658312
6.4516
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.2264
98.9027
99.5522
39.1407
6670746670301
3.3333
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
83.3333
10100
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9875
100.0000
99.9749
33.2441
39870398711
100.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_quadTR_51to200*
90.2174
82.1782
100.0000
93.4543
83188300
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_quadTR_51to200het
86.2069
75.7576
100.0000
94.2661
50165000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
97.0588
94.2857
100.0000
91.6667
3323300
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7436
99.6160
99.8716
27.5888
389115389051
20.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.6360
99.4350
99.8379
27.9708
246414246340
0.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9650
100.0000
99.9300
26.8817
14270142711
100.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_triTR_51to200*
93.3333
87.5000
100.0000
94.4882
71700
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_triTR_51to200het
90.9091
83.3333
100.0000
94.1860
51500
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
95.1220
20200
raldana-dualsentieonSNPtimap_l100_m0_e0*
99.0308
99.0400
99.0217
66.4551
21562209215592139
4.2254
raldana-dualsentieonSNPtimap_l100_m0_e0het
98.6534
98.7699
98.5371
69.8191
13811172138082052
0.9756
raldana-dualsentieonSNPtimap_l100_m0_e0hetalt
96.5517
100.0000
93.3333
59.4595
1401411
100.0000
raldana-dualsentieonSNPtimap_l100_m0_e0homalt
99.7165
99.5241
99.9096
57.9975
773737773776
85.7143
raldana-dualsentieonSNPtimap_l100_m1_e0*
99.3366
99.3470
99.3262
62.8885
476183134761132319
5.8824
raldana-dualsentieonSNPtimap_l100_m1_e0het
99.0505
99.1317
98.9695
65.9806
29682260296753096
1.9418
raldana-dualsentieonSNPtimap_l100_m1_e0hetalt
98.3051
100.0000
96.6667
62.9630
2902911
100.0000
raldana-dualsentieonSNPtimap_l100_m1_e0homalt
99.8161
99.7049
99.9275
56.2318
1790753179071312
92.3077
raldana-dualsentieonSNPtimap_l100_m2_e0*
99.3403
99.3525
99.3281
64.7470
486443174863732919
5.7751
raldana-dualsentieonSNPtimap_l100_m2_e0het
99.0553
99.1379
98.9728
67.5282
30358264303513156
1.9048
raldana-dualsentieonSNPtimap_l100_m2_e0hetalt
98.3607
100.0000
96.7742
65.1685
3003011
100.0000
raldana-dualsentieonSNPtimap_l100_m2_e0homalt
99.8196
99.7105
99.9288
58.8267
1825653182561312
92.3077
raldana-dualsentieonSNPtimap_l100_m2_e1*
99.3433
99.3594
99.3272
64.7652
491683174916133319
5.7057