PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27951-28000 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2481 | 100.0000 | 98.5075 | 84.9099 | 198 | 0 | 198 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e0 | * | 98.3636 | 98.2659 | 98.4615 | 88.9078 | 510 | 9 | 512 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e0 | het | 97.7251 | 97.0874 | 98.3713 | 89.5400 | 300 | 9 | 302 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6731 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 86.7961 | 201 | 0 | 201 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e1 | * | 98.4006 | 98.3051 | 98.4962 | 88.9741 | 522 | 9 | 524 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e1 | het | 97.7828 | 97.1609 | 98.4127 | 89.5937 | 308 | 9 | 310 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3271 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2701 | 100.0000 | 98.5507 | 86.9318 | 204 | 0 | 204 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m0_e0 | * | 95.8333 | 95.8333 | 95.8333 | 97.6967 | 23 | 1 | 23 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m0_e0 | het | 96.5517 | 93.3333 | 100.0000 | 98.1283 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.0474 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m1_e0 | * | 96.7136 | 97.1698 | 96.2617 | 95.2168 | 103 | 3 | 103 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m1_e0 | het | 95.7983 | 95.0000 | 96.6102 | 96.0482 | 57 | 3 | 57 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8495 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 92.9339 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e0 | * | 96.9163 | 97.3451 | 96.4912 | 95.6472 | 110 | 3 | 110 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e0 | het | 96.1832 | 95.4545 | 96.9231 | 96.2165 | 63 | 3 | 63 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3607 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 93.9666 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e1 | * | 96.9432 | 97.3684 | 96.5217 | 95.7407 | 111 | 3 | 111 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e1 | het | 96.1832 | 95.4545 | 96.9231 | 96.3401 | 63 | 3 | 63 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3871 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.0000 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_siren | * | 99.4006 | 99.2346 | 99.5672 | 79.0750 | 2982 | 23 | 2991 | 13 | 3 | 23.0769 | |
| hfeng-pmm3 | INDEL | I1_5 | map_siren | het | 99.2252 | 98.9292 | 99.5230 | 79.8146 | 1663 | 18 | 1669 | 8 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_siren | hetalt | 98.1818 | 96.4286 | 100.0000 | 86.7647 | 108 | 4 | 108 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_siren | homalt | 99.7534 | 99.9175 | 99.5898 | 76.7011 | 1211 | 1 | 1214 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | segdup | * | 99.4321 | 99.1501 | 99.7156 | 94.0254 | 1050 | 9 | 1052 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | segdup | het | 99.5342 | 99.2565 | 99.8134 | 94.7961 | 534 | 4 | 535 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 95.9965 | 45 | 3 | 46 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | segdup | homalt | 99.5772 | 99.5772 | 99.5772 | 92.3820 | 471 | 2 | 471 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 54.1667 | 22 | 0 | 22 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 59.3750 | 13 | 0 | 13 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | * | * | 97.8954 | 96.7812 | 99.0356 | 49.5509 | 24024 | 799 | 24029 | 234 | 222 | 94.8718 | |
| hfeng-pmm3 | INDEL | I6_15 | * | het | 98.8597 | 98.1362 | 99.5939 | 56.2294 | 9846 | 187 | 9811 | 40 | 29 | 72.5000 | |
| hfeng-pmm3 | INDEL | I6_15 | * | hetalt | 96.4340 | 93.1353 | 99.9750 | 38.6184 | 7964 | 587 | 8004 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | * | homalt | 98.2839 | 99.5993 | 97.0028 | 48.9358 | 6214 | 25 | 6214 | 192 | 191 | 99.4792 | |
| hfeng-pmm3 | INDEL | I6_15 | HG002complexvar | * | 98.1740 | 97.0367 | 99.3383 | 57.2224 | 4650 | 142 | 4654 | 31 | 31 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | HG002complexvar | het | 98.4917 | 97.0701 | 99.9556 | 58.8257 | 2286 | 69 | 2250 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | HG002complexvar | hetalt | 97.0105 | 94.1946 | 100.0000 | 56.3370 | 1152 | 71 | 1192 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | HG002complexvar | homalt | 98.6971 | 99.8353 | 97.5845 | 54.9183 | 1212 | 2 | 1212 | 30 | 30 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | HG002compoundhet | * | 95.0754 | 92.8327 | 97.4292 | 36.3885 | 8147 | 629 | 8148 | 215 | 212 | 98.6047 | |