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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 550 551 552 553 554 555 556 557 558 ... 1720 1721 » 27651-27700 / 86044 show all
jlack-gatk	SNP	*	segdup	homalt	99.8743	99.8418	99.9069	88.3916	10726	17	10726	10	10	100.0000
jlack-gatk	SNP	*	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
jlack-gatk	SNP	*	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
jlack-gatk	SNP	*	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
jlack-gatk	SNP	*	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
jlack-gatk	SNP	*	tech_badpromoters	*	97.5000	99.3631	95.7055	49.3789	156	1	156	7	0	0.0000
jlack-gatk	SNP	*	tech_badpromoters	het	95.6522	100.0000	91.6667	50.5882	77	0	77	7	0	0.0000
jlack-gatk	SNP	*	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	SNP	*	tech_badpromoters	homalt	99.3711	98.7500	100.0000	48.0263	79	1	79	0	0
jlack-gatk	SNP	ti	*	*	99.7777	99.9393	99.6165	21.7408	2084246	1265	2084182	8024	364	4.5364
jlack-gatk	SNP	ti	*	het	99.6581	99.9316	99.3861	24.9292	1281014	877	1280960	7913	288	3.6396
jlack-gatk	SNP	ti	*	hetalt	98.8034	99.3127	98.2993	52.8846	578	4	578	10	10	100.0000
jlack-gatk	SNP	ti	*	homalt	99.9698	99.9522	99.9874	15.9699	802654	384	802644	101	66	65.3465
jlack-gatk	SNP	ti	HG002complexvar	*	99.9170	99.8944	99.9396	17.8349	507899	537	507834	307	122	39.7394
jlack-gatk	SNP	ti	HG002complexvar	het	99.8980	99.8818	99.9142	17.5660	314394	372	314340	270	88	32.5926
jlack-gatk	SNP	ti	HG002complexvar	hetalt	98.7893	98.5507	99.0291	39.5894	204	3	204	2	2	100.0000
jlack-gatk	SNP	ti	HG002complexvar	homalt	99.9491	99.9163	99.9819	18.2375	193301	162	193290	35	32	91.4286
jlack-gatk	SNP	ti	HG002compoundhet	*	99.6570	99.7425	99.5716	36.7466	17433	45	17431	75	22	29.3333
jlack-gatk	SNP	ti	HG002compoundhet	het	99.4749	99.6739	99.2768	41.5881	9474	31	9472	69	16	23.1884
jlack-gatk	SNP	ti	HG002compoundhet	hetalt	99.6534	99.3092	100.0000	21.8750	575	4	575	0	0
jlack-gatk	SNP	ti	HG002compoundhet	homalt	99.8918	99.8648	99.9188	30.3225	7384	10	7384	6	6	100.0000
jlack-gatk	SNP	ti	decoy	*		0.0000		100.0000	0	0	0	0	0
jlack-gatk	SNP	ti	decoy	het		0.0000		100.0000	0	0	0	0	0
jlack-gatk	SNP	ti	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
jlack-gatk	SNP	ti	decoy	homalt		0.0000		100.0000	0	0	0	0	0
jlack-gatk	SNP	ti	func_cds	*	99.4443	99.9565	98.9373	29.0994	13781	6	13779	148	1	0.6757
jlack-gatk	SNP	ti	func_cds	het	99.1254	99.9765	98.2886	33.6861	8502	2	8500	148	1	0.6757
jlack-gatk	SNP	ti	func_cds	hetalt	100.0000	100.0000	100.0000	61.9048	8	0	8	0	0
jlack-gatk	SNP	ti	func_cds	homalt	99.9621	99.9242	100.0000	19.9058	5271	4	5271	0	0
jlack-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.0453	99.0148	99.0758	65.2537	3216	32	3216	30	7	23.3333
jlack-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.7667	98.9130	98.6207	68.3258	2002	22	2002	28	5	17.8571
jlack-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
jlack-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5082	99.1830	99.8355	58.4841	1214	10	1214	2	2	100.0000
jlack-gatk	SNP	ti	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
jlack-gatk	SNP	ti	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
jlack-gatk	SNP	ti	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
jlack-gatk	SNP	ti	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
jlack-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4351	99.7890	99.0837	56.5880	27900	59	27899	258	21	8.1395
jlack-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1812	99.7479	98.6208	60.0301	17806	45	17805	249	13	5.2209
jlack-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	83.3333	83.3333	83.3333	86.0465	5	1	5	1	1	100.0000
jlack-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8960	99.8713	99.9208	48.6105	10089	13	10089	8	7	87.5000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.8203	99.3835	98.2634	72.4925	30951	192	30951	547	35	6.3985
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.2940	99.3207	97.2884	75.8975	19446	133	19446	542	30	5.5351
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	100.0000	100.0000	100.0000	92.6829	12	0	12	0	0
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7223	99.4893	99.9565	63.3985	11493	59	11493	5	5	100.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.3078	99.3917	99.2240	48.4791	2941	18	2941	23	2	8.6957
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.0461	99.2354	98.8575	51.9477	1817	14	1817	21	0	0.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7338	99.6454	99.8224	41.5672	1124	4	1124	2	2	100.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0

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