PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27601-27650 / 86044 show all | |||||||||||||||
| jlack-gatk | SNP | * | map_l125_m1_e0 | het | 94.3869 | 99.0455 | 90.1469 | 82.7150 | 28121 | 271 | 28115 | 3073 | 220 | 7.1591 | |
| jlack-gatk | SNP | * | map_l125_m1_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 86.7257 | 28 | 2 | 28 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | map_l125_m1_e0 | homalt | 99.2141 | 98.5685 | 99.8681 | 64.3628 | 16663 | 242 | 16663 | 22 | 16 | 72.7273 | |
| jlack-gatk | SNP | * | map_l125_m2_e0 | * | 96.1886 | 98.8828 | 93.6372 | 80.3034 | 46201 | 522 | 46195 | 3139 | 239 | 7.6139 | |
| jlack-gatk | SNP | * | map_l125_m2_e0 | het | 94.4864 | 99.0654 | 90.3119 | 83.7916 | 29044 | 274 | 29038 | 3115 | 221 | 7.0947 | |
| jlack-gatk | SNP | * | map_l125_m2_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 88.6364 | 28 | 2 | 28 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | map_l125_m2_e0 | homalt | 99.2238 | 98.5842 | 99.8717 | 66.9110 | 17129 | 246 | 17129 | 22 | 16 | 72.7273 | |
| jlack-gatk | SNP | * | map_l125_m2_e1 | * | 96.2112 | 98.8920 | 93.6720 | 80.3444 | 46679 | 523 | 46673 | 3153 | 240 | 7.6118 | |
| jlack-gatk | SNP | * | map_l125_m2_e1 | het | 94.5222 | 99.0756 | 90.3690 | 83.8291 | 29366 | 274 | 29360 | 3129 | 222 | 7.0949 | |
| jlack-gatk | SNP | * | map_l125_m2_e1 | hetalt | 93.3333 | 93.3333 | 93.3333 | 88.6364 | 28 | 2 | 28 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | map_l125_m2_e1 | homalt | 99.2279 | 98.5911 | 99.8729 | 66.9215 | 17285 | 247 | 17285 | 22 | 16 | 72.7273 | |
| jlack-gatk | SNP | * | map_l150_m0_e0 | * | 93.9698 | 98.0635 | 90.2042 | 86.8496 | 11799 | 233 | 11796 | 1281 | 106 | 8.2748 | |
| jlack-gatk | SNP | * | map_l150_m0_e0 | het | 91.7997 | 98.3753 | 86.0480 | 89.1426 | 7811 | 129 | 7808 | 1266 | 94 | 7.4250 | |
| jlack-gatk | SNP | * | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.7368 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | map_l150_m0_e0 | homalt | 98.5532 | 97.4566 | 99.6748 | 74.6529 | 3985 | 104 | 3985 | 13 | 10 | 76.9231 | |
| jlack-gatk | SNP | * | map_l150_m1_e0 | * | 95.4882 | 98.6507 | 92.5222 | 82.5036 | 30196 | 413 | 30190 | 2440 | 190 | 7.7869 | |
| jlack-gatk | SNP | * | map_l150_m1_e0 | het | 93.5301 | 98.8559 | 88.7489 | 85.6678 | 19095 | 221 | 19089 | 2420 | 175 | 7.2314 | |
| jlack-gatk | SNP | * | map_l150_m1_e0 | hetalt | 90.0000 | 90.0000 | 90.0000 | 89.5833 | 18 | 2 | 18 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | map_l150_m1_e0 | homalt | 99.0703 | 98.3146 | 99.8379 | 69.3588 | 11083 | 190 | 11083 | 18 | 13 | 72.2222 | |
| jlack-gatk | SNP | * | map_l150_m2_e0 | * | 95.5915 | 98.6908 | 92.6808 | 83.6558 | 31435 | 417 | 31429 | 2482 | 191 | 7.6954 | |
| jlack-gatk | SNP | * | map_l150_m2_e0 | het | 93.6840 | 98.8973 | 88.9927 | 86.5727 | 19911 | 222 | 19905 | 2462 | 176 | 7.1487 | |
| jlack-gatk | SNP | * | map_l150_m2_e0 | hetalt | 90.0000 | 90.0000 | 90.0000 | 91.0314 | 18 | 2 | 18 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | map_l150_m2_e0 | homalt | 99.0914 | 98.3503 | 99.8438 | 71.6709 | 11506 | 193 | 11506 | 18 | 13 | 72.2222 | |
| jlack-gatk | SNP | * | map_l150_m2_e1 | * | 95.6027 | 98.6992 | 92.6947 | 83.7025 | 31791 | 419 | 31785 | 2505 | 193 | 7.7046 | |
| jlack-gatk | SNP | * | map_l150_m2_e1 | het | 93.7014 | 98.9098 | 89.0141 | 86.6201 | 20141 | 222 | 20135 | 2485 | 178 | 7.1630 | |
| jlack-gatk | SNP | * | map_l150_m2_e1 | hetalt | 90.0000 | 90.0000 | 90.0000 | 91.0314 | 18 | 2 | 18 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | map_l150_m2_e1 | homalt | 99.0927 | 98.3512 | 99.8455 | 71.6669 | 11632 | 195 | 11632 | 18 | 13 | 72.2222 | |
| jlack-gatk | SNP | * | map_l250_m0_e0 | * | 91.3907 | 96.9555 | 86.4301 | 95.6372 | 2070 | 65 | 2070 | 325 | 28 | 8.6154 | |
| jlack-gatk | SNP | * | map_l250_m0_e0 | het | 89.1456 | 97.3440 | 82.2210 | 96.2201 | 1466 | 40 | 1466 | 317 | 23 | 7.2555 | |
| jlack-gatk | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 98.3051 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jlack-gatk | SNP | * | map_l250_m0_e0 | homalt | 97.4194 | 96.0254 | 98.8543 | 92.0297 | 604 | 25 | 604 | 7 | 4 | 57.1429 | |
| jlack-gatk | SNP | * | map_l250_m1_e0 | * | 93.2444 | 97.7569 | 89.1302 | 92.5027 | 7060 | 162 | 7060 | 861 | 66 | 7.6655 | |
| jlack-gatk | SNP | * | map_l250_m1_e0 | het | 90.7389 | 97.8759 | 84.5721 | 93.7676 | 4654 | 101 | 4654 | 849 | 57 | 6.7138 | |
| jlack-gatk | SNP | * | map_l250_m1_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 96.4912 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | * | map_l250_m1_e0 | homalt | 98.5442 | 97.5639 | 99.5443 | 85.9993 | 2403 | 60 | 2403 | 11 | 8 | 72.7273 | |
| jlack-gatk | SNP | * | map_l250_m2_e0 | * | 93.5078 | 97.9074 | 89.4865 | 92.8768 | 7720 | 165 | 7720 | 907 | 67 | 7.3870 | |
| jlack-gatk | SNP | * | map_l250_m2_e0 | het | 91.0733 | 98.0169 | 85.0484 | 94.0579 | 5091 | 103 | 5091 | 895 | 58 | 6.4805 | |
| jlack-gatk | SNP | * | map_l250_m2_e0 | hetalt | 80.0000 | 80.0000 | 80.0000 | 96.3504 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | * | map_l250_m2_e0 | homalt | 98.6471 | 97.7290 | 99.5827 | 86.9731 | 2625 | 61 | 2625 | 11 | 8 | 72.7273 | |
| jlack-gatk | SNP | * | map_l250_m2_e1 | * | 93.5343 | 97.8966 | 89.5442 | 92.9358 | 7819 | 168 | 7819 | 913 | 69 | 7.5575 | |
| jlack-gatk | SNP | * | map_l250_m2_e1 | het | 91.1258 | 98.0243 | 85.1345 | 94.1114 | 5160 | 104 | 5160 | 901 | 60 | 6.6593 | |
| jlack-gatk | SNP | * | map_l250_m2_e1 | hetalt | 80.0000 | 80.0000 | 80.0000 | 96.3504 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | * | map_l250_m2_e1 | homalt | 98.6256 | 97.6821 | 99.5874 | 87.0236 | 2655 | 63 | 2655 | 11 | 8 | 72.7273 | |
| jlack-gatk | SNP | * | map_siren | * | 98.0143 | 99.3920 | 96.6743 | 64.0744 | 145339 | 889 | 145316 | 4999 | 358 | 7.1614 | |
| jlack-gatk | SNP | * | map_siren | het | 97.0812 | 99.4593 | 94.8142 | 68.9379 | 90499 | 492 | 90485 | 4949 | 324 | 6.5468 | |
| jlack-gatk | SNP | * | map_siren | hetalt | 95.1220 | 96.2963 | 93.9759 | 79.4045 | 78 | 3 | 78 | 5 | 4 | 80.0000 | |
| jlack-gatk | SNP | * | map_siren | homalt | 99.6008 | 99.2857 | 99.9179 | 50.5286 | 54762 | 394 | 54753 | 45 | 30 | 66.6667 | |
| jlack-gatk | SNP | * | segdup | * | 98.2374 | 99.8040 | 96.7192 | 93.4608 | 28012 | 55 | 28006 | 950 | 16 | 1.6842 | |
| jlack-gatk | SNP | * | segdup | het | 97.2497 | 99.7806 | 94.8441 | 94.7945 | 17279 | 38 | 17273 | 939 | 5 | 0.5325 | |
| jlack-gatk | SNP | * | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 98.2533 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |