PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26901-26950 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.6706 | 100.0000 | 82.9333 | 68.7239 | 311 | 0 | 311 | 64 | 63 | 98.4375 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.2247 | 94.5429 | 97.9675 | 63.7557 | 5977 | 345 | 5977 | 124 | 109 | 87.9032 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.6568 | 96.9051 | 98.4202 | 76.2358 | 1910 | 61 | 1869 | 30 | 19 | 63.3333 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.7955 | 92.0590 | 99.8481 | 42.7080 | 3246 | 280 | 3287 | 5 | 4 | 80.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 94.6398 | 99.5152 | 90.2198 | 70.6072 | 821 | 4 | 821 | 89 | 86 | 96.6292 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.4993 | 94.2786 | 98.8271 | 62.5995 | 2274 | 138 | 2275 | 27 | 22 | 81.4815 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.4292 | 98.1557 | 98.7041 | 82.3820 | 479 | 9 | 457 | 6 | 2 | 33.3333 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.1648 | 92.7160 | 99.8800 | 39.9063 | 1642 | 129 | 1665 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.1538 | 100.0000 | 88.9535 | 77.1580 | 153 | 0 | 153 | 19 | 18 | 94.7368 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 76.9231 | 65.2174 | 93.7500 | 58.4416 | 60 | 32 | 60 | 4 | 1 | 25.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 77.7778 | 0.0000 | 96.4286 | 7 | 2 | 0 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.9417 | 63.8554 | 96.7742 | 29.5455 | 53 | 30 | 60 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0228 | 98.0645 | 100.0000 | 83.4056 | 152 | 3 | 153 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.1870 | 98.3871 | 100.0000 | 87.0021 | 61 | 1 | 62 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.6744 | 95.4545 | 100.0000 | 75.1479 | 42 | 2 | 42 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.2464 | 49 | 0 | 49 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.8657 | 2 | 0 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.4751 | 2 | 0 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.7029 | 96.5935 | 98.8381 | 61.3357 | 1276 | 45 | 1276 | 15 | 13 | 86.6667 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.7191 | 97.1983 | 98.2456 | 71.4465 | 451 | 13 | 448 | 8 | 7 | 87.5000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.6856 | 95.4758 | 100.0000 | 43.1608 | 612 | 29 | 615 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.7064 | 98.6111 | 96.8182 | 66.6667 | 213 | 3 | 213 | 7 | 6 | 85.7143 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.8217 | 92.4731 | 99.4220 | 70.1209 | 172 | 14 | 172 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.0394 | 32 | 3 | 25 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.2199 | 92.7152 | 100.0000 | 45.9559 | 140 | 11 | 147 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 96.4286 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4012 | 99.2823 | 99.5204 | 47.6788 | 415 | 3 | 415 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7620 | 98.3607 | 99.1667 | 63.0769 | 120 | 2 | 119 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5789 | 99.5781 | 99.5798 | 24.6835 | 236 | 1 | 237 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 62.1795 | 59 | 0 | 59 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 70.2703 | 11 | 2 | 11 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.9091 | 83.3333 | 100.0000 | 38.8889 | 10 | 2 | 11 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 87.8788 | 87.8788 | 87.8788 | 93.2927 | 29 | 4 | 29 | 4 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m0_e0 | het | 80.0000 | 82.3529 | 77.7778 | 94.5619 | 14 | 3 | 14 | 4 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 93.0233 | 3 | 1 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l100_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 89.8305 | 12 | 0 | 12 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 92.6407 | 93.8596 | 91.4530 | 88.9934 | 107 | 7 | 107 | 10 | 0 | 0.0000 | |