PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26451-26500 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4066 | 99.4274 | 99.3858 | 50.7439 | 11807 | 68 | 11812 | 73 | 23 | 31.5068 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3167 | 99.5384 | 99.0960 | 53.8093 | 6685 | 31 | 6687 | 61 | 11 | 18.0328 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7481 | 97.7227 | 99.7952 | 31.6698 | 1459 | 34 | 1462 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8365 | 99.9182 | 99.7549 | 50.2169 | 3663 | 3 | 3663 | 9 | 9 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.3321 | 96.2662 | 98.4219 | 60.3556 | 1186 | 46 | 1185 | 19 | 18 | 94.7368 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.6256 | 97.1429 | 98.1132 | 78.4302 | 374 | 11 | 364 | 7 | 6 | 85.7143 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.0123 | 94.7692 | 99.3641 | 23.2927 | 616 | 34 | 625 | 4 | 4 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.7556 | 99.4924 | 96.0784 | 58.9537 | 196 | 1 | 196 | 8 | 8 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8160 | 99.7792 | 99.8528 | 43.7655 | 4068 | 9 | 4071 | 6 | 1 | 16.6667 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7594 | 99.7374 | 99.7814 | 47.4494 | 2279 | 6 | 2282 | 5 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5662 | 99.3506 | 99.7826 | 28.3489 | 459 | 3 | 459 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 41.0461 | 1330 | 0 | 1330 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.7931 | 90.6667 | 97.1429 | 62.7660 | 68 | 7 | 68 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 96.2963 | 100.0000 | 92.8571 | 85.5670 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 92.3077 | 85.7143 | 100.0000 | 25.0000 | 42 | 7 | 42 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 60.0000 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m0_e0 | * | 93.4498 | 98.2619 | 89.0871 | 88.3254 | 848 | 15 | 849 | 104 | 6 | 5.7692 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 91.3204 | 98.6464 | 85.0073 | 89.4535 | 583 | 8 | 584 | 103 | 5 | 4.8544 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 93.7500 | 12 | 2 | 12 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l100_m0_e0 | homalt | 98.8281 | 98.0620 | 99.6063 | 82.5669 | 253 | 5 | 253 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m1_e0 | * | 95.2221 | 98.5390 | 92.1212 | 86.6783 | 1821 | 27 | 1824 | 156 | 11 | 7.0513 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m1_e0 | het | 93.4933 | 99.0074 | 88.5609 | 87.9481 | 1197 | 12 | 1200 | 155 | 10 | 6.4516 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 93.1818 | 87.2340 | 100.0000 | 90.9492 | 41 | 6 | 41 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.1497 | 98.4797 | 99.8288 | 81.5598 | 583 | 9 | 583 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e0 | * | 95.2850 | 98.5379 | 92.2401 | 87.2851 | 1887 | 28 | 1890 | 159 | 11 | 6.9182 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e0 | het | 93.5776 | 98.9650 | 88.7464 | 88.5144 | 1243 | 13 | 1246 | 158 | 10 | 6.3291 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 91.3402 | 42 | 6 | 42 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.1763 | 98.5270 | 99.8342 | 82.2959 | 602 | 9 | 602 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e1 | * | 95.2916 | 98.5044 | 92.2817 | 87.3451 | 1910 | 29 | 1913 | 160 | 11 | 6.8750 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.8694 | 99.1317 | 98.6084 | 82.6759 | 4110 | 36 | 4110 | 58 | 16 | 27.5862 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.4586 | 99.0170 | 97.9065 | 84.2545 | 2619 | 26 | 2619 | 56 | 14 | 25.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.5984 | 99.3324 | 99.8658 | 78.7628 | 1488 | 10 | 1488 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.8898 | 99.3274 | 96.4931 | 80.2111 | 14473 | 98 | 14473 | 526 | 28 | 5.3232 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.8586 | 99.2554 | 94.5749 | 83.0098 | 9065 | 68 | 9065 | 520 | 22 | 4.2308 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1406 | 15 | 0 | 15 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.6673 | 99.4468 | 99.8889 | 71.7685 | 5393 | 30 | 5393 | 6 | 6 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.4853 | 99.5058 | 99.4648 | 66.6987 | 4832 | 24 | 4832 | 26 | 14 | 53.8462 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.3694 | 99.5142 | 99.2251 | 69.4063 | 3073 | 15 | 3073 | 24 | 12 | 50.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6881 | 99.4907 | 99.8864 | 60.3693 | 1758 | 9 | 1758 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.4444 | 73.0769 | 100.0000 | 97.5228 | 19 | 7 | 19 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.5714 | 64.7059 | 100.0000 | 98.1293 | 11 | 6 | 11 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 95.4802 | 8 | 1 | 8 | 0 | 0 | ||