PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24801-24850 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | I16_PLUS | map_siren | het | 91.3043 | 85.7143 | 97.6744 | 87.6791 | 42 | 7 | 42 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_siren | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.4951 | 16 | 0 | 17 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_siren | homalt | 97.5610 | 95.2381 | 100.0000 | 94.4904 | 20 | 1 | 20 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 93.7419 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 93.6842 | 24 | 0 | 24 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 92.3954 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | * | * | 99.4941 | 99.2055 | 99.7844 | 57.0293 | 149467 | 1197 | 149502 | 323 | 257 | 79.5666 | |
| jli-custom | INDEL | I1_5 | * | het | 99.6300 | 99.4800 | 99.7804 | 58.4682 | 78630 | 411 | 78600 | 173 | 112 | 64.7399 | |
| jli-custom | INDEL | I1_5 | * | hetalt | 96.7648 | 93.7740 | 99.9527 | 62.3212 | 10498 | 697 | 10559 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | I1_5 | * | homalt | 99.8065 | 99.8527 | 99.7603 | 53.8126 | 60339 | 89 | 60343 | 145 | 140 | 96.5517 | |
| jli-custom | INDEL | I1_5 | HG002complexvar | * | 99.4264 | 98.9689 | 99.8882 | 55.8919 | 33019 | 344 | 33052 | 37 | 27 | 72.9730 | |
| jli-custom | INDEL | I1_5 | HG002complexvar | het | 99.6665 | 99.4282 | 99.9059 | 56.5291 | 18085 | 104 | 18053 | 17 | 9 | 52.9412 | |
| jli-custom | INDEL | I1_5 | HG002complexvar | hetalt | 92.7842 | 86.7323 | 99.7439 | 70.2420 | 1497 | 229 | 1558 | 4 | 4 | 100.0000 | |
| jli-custom | INDEL | I1_5 | HG002complexvar | homalt | 99.8996 | 99.9182 | 99.8811 | 52.2818 | 13437 | 11 | 13441 | 16 | 14 | 87.5000 | |
| jli-custom | INDEL | I1_5 | HG002compoundhet | * | 96.2734 | 94.1810 | 98.4609 | 66.0757 | 11637 | 719 | 11643 | 182 | 172 | 94.5055 | |
| jli-custom | INDEL | I1_5 | HG002compoundhet | het | 95.4593 | 97.4118 | 93.5835 | 85.3129 | 828 | 22 | 773 | 53 | 44 | 83.0189 | |
| jli-custom | INDEL | I1_5 | HG002compoundhet | hetalt | 96.7731 | 93.7729 | 99.9716 | 58.2211 | 10481 | 696 | 10542 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I1_5 | HG002compoundhet | homalt | 83.7803 | 99.6960 | 72.2467 | 88.6301 | 328 | 1 | 328 | 126 | 125 | 99.2063 | |
| jli-custom | INDEL | I1_5 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I1_5 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I1_5 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I1_5 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I1_5 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 32.8358 | 180 | 0 | 180 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 39.1753 | 59 | 0 | 59 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.5858 | 119 | 0 | 119 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.8328 | 92.0195 | 97.8236 | 63.3039 | 1695 | 147 | 1708 | 38 | 31 | 81.5789 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.8948 | 95.1662 | 96.6346 | 75.0898 | 630 | 32 | 603 | 21 | 15 | 71.4286 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.4149 | 87.7369 | 99.8786 | 37.6230 | 787 | 110 | 823 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.3984 | 98.2332 | 94.6309 | 68.0258 | 278 | 5 | 282 | 16 | 15 | 93.7500 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8498 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.4747 | 97.3872 | 99.5868 | 71.5695 | 15170 | 407 | 15184 | 63 | 47 | 74.6032 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1608 | 98.9184 | 99.4045 | 76.5307 | 6036 | 66 | 6009 | 36 | 20 | 55.5556 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.0633 | 94.3415 | 99.9468 | 62.9123 | 5602 | 336 | 5641 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5913 | 99.8586 | 99.3255 | 71.8824 | 3532 | 5 | 3534 | 24 | 24 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.1965 | 97.0144 | 99.4078 | 64.7466 | 15597 | 480 | 15611 | 93 | 72 | 77.4194 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5394 | 97.9595 | 99.1262 | 72.9162 | 6289 | 131 | 6239 | 55 | 36 | 65.4545 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.1401 | 94.4708 | 99.9645 | 35.6743 | 5570 | 326 | 5631 | 2 | 2 | 100.0000 | |