PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24401-24450 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 88.2353 | 93.7500 | 83.3333 | 95.0276 | 15 | 1 | 15 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.0526 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.8525 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | * | 98.1818 | 100.0000 | 96.4286 | 94.9911 | 27 | 0 | 27 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.8454 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.3235 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | * | 98.1818 | 100.0000 | 96.4286 | 95.6386 | 27 | 0 | 27 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.4338 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.1053 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.9880 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | * | 96.4286 | 96.4286 | 96.4286 | 95.7382 | 27 | 1 | 27 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 95.5556 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.0414 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.5347 | 7 | 0 | 7 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.1724 | 7 | 0 | 7 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 96.7742 | 100.0000 | 93.7500 | 95.6989 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.6970 | 14 | 0 | 14 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 98.7654 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | * | 97.1429 | 100.0000 | 94.4444 | 95.9641 | 17 | 0 | 17 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.7883 | 16 | 0 | 16 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 99.0991 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | * | 94.4444 | 94.4444 | 94.4444 | 96.0177 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 94.8553 | 16 | 0 | 16 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.4286 | 1 | 1 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 99.1150 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.6667 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.1132 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | D16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.4359 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.1963 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.4619 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.7612 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 97.4874 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 97.7941 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_siren | * | 94.6492 | 93.0070 | 96.3504 | 92.5503 | 133 | 10 | 132 | 5 | 0 | 0.0000 | |