PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24001-24050 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.8637 | 96.0976 | 95.6311 | 88.8829 | 197 | 8 | 197 | 9 | 5 | 55.5556 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.7799 | 90.7407 | 97.0297 | 86.3881 | 98 | 10 | 98 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.4000 | 89.3939 | 100.0000 | 85.7855 | 59 | 7 | 57 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 97.1429 | 94.4444 | 100.0000 | 81.0000 | 17 | 1 | 19 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 89.7959 | 91.6667 | 88.0000 | 89.6266 | 22 | 2 | 22 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.8300 | 94.3820 | 99.4083 | 77.2237 | 168 | 10 | 168 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.1429 | 94.4444 | 100.0000 | 75.6691 | 102 | 6 | 100 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.0588 | 94.2857 | 100.0000 | 74.2647 | 33 | 2 | 35 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6522 | 94.2857 | 97.0588 | 82.5641 | 33 | 2 | 33 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.8764 | 98.8764 | 98.8764 | 69.7279 | 88 | 1 | 88 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 67.0807 | 53 | 0 | 53 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 65.4545 | 19 | 1 | 19 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 96.9697 | 100.0000 | 94.1176 | 78.2051 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.3082 | 81.6092 | 98.6111 | 83.0588 | 71 | 16 | 71 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.7959 | 81.4815 | 100.0000 | 90.4762 | 22 | 5 | 18 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 89.7196 | 81.3559 | 100.0000 | 72.0430 | 48 | 11 | 52 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 96.0000 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.4518 | 90.7445 | 98.4749 | 72.4655 | 451 | 46 | 452 | 7 | 5 | 71.4286 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 90.5960 | 84.9624 | 97.0297 | 85.4676 | 113 | 20 | 98 | 3 | 1 | 33.3333 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.9169 | 92.6686 | 99.4012 | 55.4667 | 316 | 25 | 332 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.6170 | 95.6522 | 91.6667 | 89.1892 | 22 | 1 | 22 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 95.2656 | 92.2705 | 98.4615 | 70.0920 | 382 | 32 | 384 | 6 | 4 | 66.6667 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 90.8127 | 85.8491 | 96.3855 | 84.5149 | 91 | 15 | 80 | 3 | 1 | 33.3333 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7901 | 94.4056 | 99.2982 | 51.6949 | 270 | 16 | 283 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.4545 | 95.4545 | 95.4545 | 87.6404 | 21 | 1 | 21 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.7936 | 91.4119 | 98.4351 | 78.0939 | 628 | 59 | 629 | 10 | 5 | 50.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 93.5393 | 89.0244 | 98.5366 | 84.9486 | 219 | 27 | 202 | 3 | 1 | 33.3333 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.7836 | 92.3684 | 99.4609 | 59.6300 | 351 | 29 | 369 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.5484 | 95.0820 | 92.0635 | 90.0943 | 58 | 3 | 58 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 95.1323 | 91.9608 | 98.5304 | 80.4728 | 1407 | 123 | 1408 | 21 | 9 | 42.8571 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 93.4337 | 89.0390 | 98.2847 | 83.6374 | 593 | 73 | 573 | 10 | 2 | 20.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.5621 | 93.6267 | 99.6875 | 66.3512 | 617 | 42 | 638 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.8637 | 96.0976 | 95.6311 | 88.8829 | 197 | 8 | 197 | 9 | 5 | 55.5556 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.5344 | 93.5417 | 97.6139 | 77.7831 | 449 | 31 | 450 | 11 | 7 | 63.6364 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 93.4142 | 91.2500 | 95.6835 | 86.3458 | 146 | 14 | 133 | 6 | 2 | 33.3333 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.5190 | 93.9068 | 99.2806 | 63.1788 | 262 | 17 | 276 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.4706 | 100.0000 | 93.1818 | 85.4305 | 41 | 0 | 41 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 50.0000 | 100.0000 | 91.6667 | 2 | 2 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 71.4286 | 1 | 1 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 94.5517 | 91.4894 | 97.8261 | 77.4510 | 43 | 4 | 45 | 1 | 1 | 100.0000 | |