PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
22851-22900 / 86044 show all
jli-customSNP*map_l100_m1_e0het
99.2812
99.1159
99.4470
63.0672
449584014495525062
24.8000
jli-customSNP*map_l100_m1_e0hetalt
98.7952
100.0000
97.6190
72.5490
4104111
100.0000
jli-customSNP*map_l100_m1_e0homalt
99.7923
99.6482
99.9369
57.0814
2690895269081716
94.1176
jli-customSNP*map_l100_m2_e0*
99.4726
99.3267
99.6190
63.1033
734664987346328179
28.1139
jli-customSNP*map_l100_m2_e0het
99.2823
99.1336
99.4314
64.8428
459974024599426362
23.5741
jli-customSNP*map_l100_m2_e0hetalt
98.8235
100.0000
97.6744
75.2874
4204211
100.0000
jli-customSNP*map_l100_m2_e0homalt
99.7944
99.6512
99.9381
59.7123
2742796274271716
94.1176
jli-customSNP*map_l100_m2_e1*
99.4761
99.3323
99.6202
63.1271
742384997423528379
27.9152
jli-customSNP*map_l100_m2_e1het
99.2878
99.1428
99.4333
64.8837
464964024649326562
23.3962
jli-customSNP*map_l100_m2_e1hetalt
98.8506
100.0000
97.7273
74.8571
4304311
100.0000
jli-customSNP*map_l100_m2_e1homalt
99.7946
99.6510
99.9387
59.6958
2769997276991716
94.1176
jli-customSNP*map_l125_m0_e0*
98.9095
98.4885
99.3340
69.7637
190922931909212848
37.5000
jli-customSNP*map_l125_m0_e0het
98.5516
98.0575
99.0508
71.6081
124182461241811939
32.7731
jli-customSNP*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
79.0698
90900
jli-customSNP*map_l125_m0_e0homalt
99.5817
99.2998
99.8651
65.5375
666547666599
100.0000
jli-customSNP*map_l125_m1_e0*
99.3178
99.0844
99.5522
66.7512
449124154490920267
33.1683
jli-customSNP*map_l125_m1_e0het
99.0623
98.7919
99.3341
68.8001
280493432804618854
28.7234
jli-customSNP*map_l125_m1_e0hetalt
100.0000
100.0000
100.0000
74.1379
3003000
jli-customSNP*map_l125_m1_e0homalt
99.7452
99.5741
99.9169
62.6179
1683372168331413
92.8571
jli-customSNP*map_l125_m2_e0*
99.3286
99.1032
99.5549
68.8474
463044194630120767
32.3671
jli-customSNP*map_l125_m2_e0het
99.0801
98.8232
99.3382
70.5778
289733452897019354
27.9793
jli-customSNP*map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
78.4173
3003000
jli-customSNP*map_l125_m2_e0homalt
99.7463
99.5741
99.9191
65.3928
1730174173011413
92.8571
jli-customSNP*map_l125_m2_e1*
99.3354
99.1123
99.5595
68.9095
467834194678020767
32.3671
jli-customSNP*map_l125_m2_e1het
99.0901
98.8360
99.3454
70.6523
292953452929219354
27.9793
jli-customSNP*map_l125_m2_e1hetalt
100.0000
100.0000
100.0000
78.4173
3003000
jli-customSNP*map_l125_m2_e1homalt
99.7486
99.5779
99.9199
65.4177
1745874174581413
92.8571
jli-customSNP*map_l150_m0_e0*
98.7204
98.1051
99.3435
75.0933
11804228118047829
37.1795
jli-customSNP*map_l150_m0_e0het
98.2666
97.4559
99.0908
76.5432
773820277387122
30.9859
jli-customSNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
91.1765
30300
jli-customSNP*map_l150_m0_e0homalt
99.5955
99.3641
99.8280
71.6988
406326406377
100.0000
jli-customSNP*map_l150_m1_e0*
99.1511
98.8337
99.4706
71.1384
302523573024916158
36.0248
jli-customSNP*map_l150_m1_e0het
98.8306
98.4521
99.2121
72.9358
190172991901415148
31.7881
jli-customSNP*map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
78.4946
2002000
jli-customSNP*map_l150_m1_e0homalt
99.6978
99.4855
99.9109
67.4251
1121558112151010
100.0000
jli-customSNP*map_l150_m2_e0*
99.1640
98.8698
99.4599
73.1036
314923603148917159
34.5029
jli-customSNP*map_l150_m2_e0het
98.8511
98.5099
99.1946
74.6204
198333001983016149
30.4348
jli-customSNP*map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
81.9820
2002000
jli-customSNP*map_l150_m2_e0homalt
99.7002
99.4871
99.9142
70.0015
1163960116391010
100.0000
jli-customSNP*map_l150_m2_e1*
99.1717
98.8823
99.4628
73.1735
318503603184717259
34.3023
jli-customSNP*map_l150_m2_e1het
98.8617
98.5267
99.1989
74.7124
200633002006016249
30.2469
jli-customSNP*map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
81.9820
2002000
jli-customSNP*map_l150_m2_e1homalt
99.7034
99.4927
99.9151
70.0155
1176760117671010
100.0000
jli-customSNP*map_l250_m0_e0*
97.2831
95.5972
99.0296
90.2998
20419420412012
60.0000
jli-customSNP*map_l250_m0_e0het
96.5658
94.2895
98.9547
90.3152
1420861420157
46.6667
jli-customSNP*map_l250_m0_e0hetalt
0.0000
100.0000
00000
jli-customSNP*map_l250_m0_e0homalt
98.9641
98.7281
99.2013
90.2386
621862155
100.0000
jli-customSNP*map_l250_m1_e0*
98.1678
97.1891
99.1664
85.6613
701920370195929
49.1525
jli-customSNP*map_l250_m1_e0het
97.5495
96.2776
98.8555
86.3033
457817745785323
43.3962
jli-customSNP*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
91.8367
40400