PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22751-22800 / 86044 show all | |||||||||||||||
| jli-custom | SNP | * | func_cds | het | 99.8568 | 99.9552 | 99.7586 | 24.6835 | 11156 | 5 | 11156 | 27 | 0 | 0.0000 | |
| jli-custom | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 62.9630 | 10 | 0 | 10 | 0 | 0 | ||
| jli-custom | SNP | * | func_cds | homalt | 99.9785 | 99.9570 | 100.0000 | 21.0413 | 6976 | 3 | 6976 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.2976 | 99.4123 | 99.1832 | 67.8581 | 4736 | 28 | 4736 | 39 | 8 | 20.5128 | |
| jli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.0580 | 99.3700 | 98.7479 | 70.2830 | 2997 | 19 | 2997 | 38 | 7 | 18.4211 | |
| jli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7133 | 99.4851 | 99.9425 | 62.4676 | 1739 | 9 | 1739 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.5883 | 99.8077 | 99.3700 | 59.7371 | 55524 | 107 | 55520 | 352 | 27 | 7.6705 | |
| jli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4050 | 99.7685 | 99.0441 | 61.4043 | 35337 | 82 | 35333 | 341 | 20 | 5.8651 | |
| jli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 82.6087 | 12 | 1 | 12 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9133 | 99.8812 | 99.9455 | 56.3725 | 20175 | 24 | 20175 | 11 | 7 | 63.6364 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.3617 | 99.6215 | 99.1032 | 69.4732 | 45529 | 173 | 45529 | 412 | 31 | 7.5243 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0815 | 99.5612 | 98.6064 | 70.5927 | 28586 | 126 | 28586 | 404 | 25 | 6.1881 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.6364 | 15 | 0 | 15 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8378 | 99.7231 | 99.9528 | 67.2930 | 16928 | 47 | 16928 | 8 | 6 | 75.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.5467 | 99.6973 | 99.3965 | 52.0107 | 4282 | 13 | 4282 | 26 | 1 | 3.8462 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.3316 | 99.5905 | 99.0741 | 54.4458 | 2675 | 11 | 2675 | 25 | 0 | 0.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.9067 | 99.8757 | 99.9378 | 47.2268 | 1607 | 2 | 1607 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6527 | 99.7736 | 99.5322 | 54.5761 | 6170 | 14 | 6170 | 29 | 0 | 0.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4669 | 99.6693 | 99.2653 | 55.9536 | 3918 | 13 | 3918 | 29 | 0 | 0.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9778 | 99.9556 | 100.0000 | 51.9120 | 2251 | 1 | 2251 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6651 | 99.7679 | 99.5625 | 58.6903 | 3869 | 9 | 3869 | 17 | 0 | 0.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4796 | 99.6391 | 99.3205 | 59.4883 | 2485 | 9 | 2485 | 17 | 0 | 0.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 1383 | 0 | 1383 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.6684 | 97.6684 | 97.6684 | 90.9048 | 377 | 9 | 377 | 9 | 4 | 44.4444 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.4820 | 98.1884 | 96.7857 | 90.8765 | 271 | 5 | 271 | 9 | 4 | 44.4444 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.1481 | 96.3636 | 100.0000 | 90.9556 | 106 | 4 | 106 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.9880 | 99.0063 | 98.9698 | 87.7821 | 2690 | 27 | 2690 | 28 | 12 | 42.8571 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.7850 | 99.0930 | 98.4789 | 88.6741 | 1748 | 16 | 1748 | 27 | 12 | 44.4444 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.3658 | 98.8433 | 99.8937 | 85.6380 | 940 | 11 | 940 | 1 | 0 | 0.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.1341 | 99.1132 | 99.1550 | 87.2227 | 2347 | 21 | 2347 | 20 | 8 | 40.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.9120 | 99.0753 | 98.7492 | 88.2866 | 1500 | 14 | 1500 | 19 | 8 | 42.1053 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||