PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22251-22300 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.5545 | 74.9201 | 99.7073 | 29.8906 | 938 | 314 | 1022 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.4765 | 97.7716 | 74.3644 | 48.9730 | 351 | 8 | 351 | 121 | 119 | 98.3471 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7095 | 99.5789 | 99.8404 | 58.9584 | 28141 | 119 | 28144 | 45 | 19 | 42.2222 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7777 | 99.7261 | 99.8294 | 60.1055 | 16384 | 45 | 16383 | 28 | 4 | 14.2857 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.7395 | 87.1028 | 99.1561 | 70.9914 | 466 | 69 | 470 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9204 | 99.9557 | 99.8850 | 56.3788 | 11291 | 5 | 11291 | 13 | 12 | 92.3077 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 93.7133 | 90.3226 | 97.3684 | 99.9248 | 112 | 12 | 111 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 91.4483 | 86.2069 | 97.3684 | 99.9056 | 75 | 12 | 74 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8805 | 16 | 0 | 16 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9618 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1711 | 98.8017 | 99.5433 | 59.8357 | 19624 | 238 | 19617 | 90 | 58 | 64.4444 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4180 | 99.2798 | 99.5566 | 63.6361 | 11028 | 80 | 11002 | 49 | 18 | 36.7347 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 96.9531 | 94.2953 | 99.7651 | 38.9579 | 2529 | 153 | 2548 | 6 | 6 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6714 | 99.9177 | 99.4264 | 57.8940 | 6067 | 5 | 6067 | 35 | 34 | 97.1429 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.5329 | 95.5556 | 97.5304 | 68.9206 | 2537 | 118 | 2488 | 63 | 54 | 85.7143 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.2389 | 96.7975 | 95.6867 | 83.0087 | 937 | 31 | 843 | 38 | 30 | 78.9474 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.0371 | 92.9707 | 99.3127 | 30.7967 | 1111 | 84 | 1156 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.9960 | 99.3902 | 96.6403 | 62.2670 | 489 | 3 | 489 | 17 | 16 | 94.1176 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5459 | 99.3019 | 99.7911 | 49.8616 | 6686 | 47 | 6688 | 14 | 9 | 64.2857 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6443 | 99.5626 | 99.7262 | 54.5715 | 3642 | 16 | 3642 | 10 | 5 | 50.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.2940 | 96.7497 | 99.8884 | 27.0952 | 893 | 30 | 895 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9071 | 99.9535 | 99.8607 | 47.4506 | 2151 | 1 | 2151 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.4191 | 94.1441 | 96.7290 | 64.9180 | 209 | 13 | 207 | 7 | 5 | 71.4286 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.6475 | 90.0000 | 91.3043 | 86.0606 | 45 | 5 | 42 | 4 | 2 | 50.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.6942 | 93.6000 | 100.0000 | 27.1605 | 117 | 8 | 118 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.9072 | 100.0000 | 94.0000 | 57.6271 | 47 | 0 | 47 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l100_m0_e0 | * | 95.8731 | 97.9527 | 93.8800 | 90.3027 | 1531 | 32 | 1534 | 100 | 9 | 9.0000 | |
| jmaeng-gatk | INDEL | * | map_l100_m0_e0 | het | 94.7997 | 98.0411 | 91.7658 | 91.6857 | 1001 | 20 | 1003 | 90 | 4 | 4.4444 | |
| jmaeng-gatk | INDEL | * | map_l100_m0_e0 | hetalt | 91.8033 | 84.8485 | 100.0000 | 91.6427 | 28 | 5 | 29 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l100_m0_e0 | homalt | 98.3350 | 98.6248 | 98.0469 | 84.7483 | 502 | 7 | 502 | 10 | 5 | 50.0000 | |
| jmaeng-gatk | INDEL | * | map_l100_m1_e0 | * | 96.9028 | 98.0201 | 95.8107 | 88.4970 | 3515 | 71 | 3522 | 154 | 21 | 13.6364 | |
| jmaeng-gatk | INDEL | * | map_l100_m1_e0 | het | 96.0483 | 98.2103 | 93.9795 | 90.0412 | 2195 | 40 | 2201 | 141 | 14 | 9.9291 | |
| jmaeng-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 93.1034 | 87.0968 | 100.0000 | 87.1915 | 108 | 16 | 109 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l100_m1_e0 | homalt | 98.8581 | 98.7775 | 98.9388 | 83.8582 | 1212 | 15 | 1212 | 13 | 7 | 53.8462 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e0 | * | 96.9371 | 97.9962 | 95.9006 | 89.1934 | 3619 | 74 | 3626 | 155 | 21 | 13.5484 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e0 | het | 96.1235 | 98.1795 | 94.1518 | 90.6489 | 2265 | 42 | 2270 | 141 | 14 | 9.9291 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e0 | hetalt | 92.7039 | 86.4000 | 100.0000 | 88.0952 | 108 | 17 | 110 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l100_m2_e0 | homalt | 98.8497 | 98.8105 | 98.8889 | 84.7844 | 1246 | 15 | 1246 | 14 | 7 | 50.0000 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e1 | * | 96.9607 | 97.9766 | 95.9656 | 89.2269 | 3680 | 76 | 3687 | 155 | 21 | 13.5484 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e1 | het | 96.1817 | 98.2074 | 94.2378 | 90.6863 | 2301 | 42 | 2306 | 141 | 14 | 9.9291 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e1 | hetalt | 92.2449 | 85.6061 | 100.0000 | 87.9328 | 113 | 19 | 115 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l100_m2_e1 | homalt | 98.8676 | 98.8290 | 98.9062 | 84.8287 | 1266 | 15 | 1266 | 14 | 7 | 50.0000 | |