PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21651-21700 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4666 | 99.1489 | 99.7863 | 69.8065 | 466 | 4 | 467 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.5450 | 95.2077 | 100.0000 | 30.5361 | 298 | 15 | 298 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6269 | 100.0000 | 99.2565 | 66.1635 | 267 | 0 | 267 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 62.6866 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 90.9091 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 12.0000 | 22 | 1 | 22 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I1_5 | map_l100_m0_e0 | * | 97.2027 | 98.8950 | 95.5674 | 89.4362 | 537 | 6 | 539 | 25 | 3 | 12.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m0_e0 | het | 95.9708 | 98.1595 | 93.8776 | 91.6586 | 320 | 6 | 322 | 21 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5252 | 9 | 0 | 9 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 80.5147 | 208 | 0 | 208 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m1_e0 | * | 97.7805 | 98.5063 | 97.0653 | 87.3586 | 1319 | 20 | 1323 | 40 | 5 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m1_e0 | het | 96.8346 | 98.0695 | 95.6305 | 89.6028 | 762 | 15 | 766 | 35 | 1 | 2.8571 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 88.7671 | 41 | 3 | 41 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.3263 | 99.6139 | 99.0403 | 80.7962 | 516 | 2 | 516 | 5 | 4 | 80.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 97.8271 | 98.5380 | 97.1264 | 88.2650 | 1348 | 20 | 1352 | 40 | 5 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e0 | het | 96.8975 | 98.1084 | 95.7160 | 90.3622 | 778 | 15 | 782 | 35 | 1 | 2.8571 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 89.6465 | 41 | 3 | 41 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3427 | 99.6234 | 99.0637 | 82.1345 | 529 | 2 | 529 | 5 | 4 | 80.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e1 | * | 97.8688 | 98.5663 | 97.1811 | 88.3046 | 1375 | 20 | 1379 | 40 | 5 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e1 | het | 96.9616 | 98.1481 | 95.8034 | 90.3939 | 795 | 15 | 799 | 35 | 1 | 2.8571 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 89.6296 | 42 | 3 | 42 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.3536 | 99.6296 | 99.0792 | 82.1733 | 538 | 2 | 538 | 5 | 4 | 80.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 96.6800 | 98.3871 | 95.0311 | 92.5047 | 305 | 5 | 306 | 16 | 2 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 95.4250 | 97.3958 | 93.5323 | 94.0708 | 187 | 5 | 188 | 13 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0784 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 85.4478 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m1_e0 | * | 97.7337 | 98.5542 | 96.9267 | 89.8768 | 818 | 12 | 820 | 26 | 3 | 11.5385 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 96.6592 | 97.9424 | 95.4092 | 91.8124 | 476 | 10 | 478 | 23 | 1 | 4.3478 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3071 | 17 | 0 | 17 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.2366 | 99.3884 | 99.0854 | 83.4677 | 325 | 2 | 325 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e0 | * | 97.6916 | 98.5998 | 96.8000 | 90.6836 | 845 | 12 | 847 | 28 | 3 | 10.7143 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e0 | het | 96.5410 | 97.9879 | 95.1362 | 92.5138 | 487 | 10 | 489 | 25 | 1 | 4.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.4483 | 19 | 0 | 19 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.2679 | 99.4135 | 99.1228 | 84.7048 | 339 | 2 | 339 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e1 | * | 97.6702 | 98.6207 | 96.7379 | 90.7511 | 858 | 12 | 860 | 29 | 3 | 10.3448 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e1 | het | 96.5214 | 98.0315 | 95.0570 | 92.5273 | 498 | 10 | 500 | 26 | 1 | 3.8462 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5593 | 19 | 0 | 19 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.2722 | 99.4169 | 99.1279 | 84.8990 | 341 | 2 | 341 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m0_e0 | * | 96.0815 | 97.1591 | 95.0276 | 94.8594 | 171 | 5 | 172 | 9 | 2 | 22.2222 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m0_e0 | het | 94.4228 | 95.2830 | 93.5780 | 96.1457 | 101 | 5 | 102 | 7 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 3 | 0 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 88.8350 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 96.8834 | 98.0237 | 95.7692 | 92.4077 | 496 | 10 | 498 | 22 | 3 | 13.6364 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 95.5869 | 97.3244 | 93.9103 | 93.8991 | 291 | 8 | 293 | 19 | 1 | 5.2632 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3125 | 9 | 0 | 9 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.7406 | 98.9899 | 98.4925 | 87.1030 | 196 | 2 | 196 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 96.8684 | 98.0732 | 95.6929 | 93.1327 | 509 | 10 | 511 | 23 | 3 | 13.0435 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 95.5756 | 97.4110 | 93.8080 | 94.4224 | 301 | 8 | 303 | 20 | 1 | 5.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.9821 | 9 | 0 | 9 | 0 | 0 | ||