PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21151-21200 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | * | 83.3333 | 100.0000 | 71.4286 | 98.2278 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 98.4177 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.3607 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | * | 83.3333 | 100.0000 | 71.4286 | 98.2500 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 98.4424 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.3607 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_siren | * | 92.7526 | 94.4056 | 91.1565 | 94.8923 | 135 | 8 | 134 | 13 | 2 | 15.3846 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_siren | het | 92.3788 | 96.1538 | 88.8889 | 96.1410 | 75 | 3 | 72 | 9 | 2 | 22.2222 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 81.6456 | 27 | 4 | 29 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_siren | homalt | 92.9577 | 97.0588 | 89.1892 | 94.0419 | 33 | 1 | 33 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | segdup | * | 94.1176 | 96.5517 | 91.8033 | 97.0113 | 56 | 2 | 56 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | segdup | het | 93.3333 | 100.0000 | 87.5000 | 97.4260 | 37 | 0 | 35 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.8571 | 7 | 2 | 9 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6759 | 12 | 0 | 12 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D1_5 | * | * | 99.3810 | 99.3322 | 99.4300 | 61.6387 | 145765 | 980 | 145820 | 836 | 338 | 40.4306 | |
| jmaeng-gatk | INDEL | D1_5 | * | het | 99.4941 | 99.6997 | 99.2893 | 60.9724 | 87311 | 263 | 87316 | 625 | 129 | 20.6400 | |
| jmaeng-gatk | INDEL | D1_5 | * | hetalt | 96.3487 | 93.3431 | 99.5544 | 62.8913 | 9563 | 682 | 9606 | 43 | 43 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | * | homalt | 99.7928 | 99.9285 | 99.6576 | 62.5365 | 48891 | 35 | 48898 | 168 | 166 | 98.8095 | |
| jmaeng-gatk | INDEL | D1_5 | HG002complexvar | * | 99.4486 | 99.1930 | 99.7055 | 58.6476 | 32451 | 264 | 32505 | 96 | 76 | 79.1667 | |
| jmaeng-gatk | INDEL | D1_5 | HG002complexvar | het | 99.6962 | 99.5666 | 99.8262 | 56.4161 | 20675 | 90 | 20679 | 36 | 18 | 50.0000 | |
| jmaeng-gatk | INDEL | D1_5 | HG002complexvar | hetalt | 92.2064 | 88.1657 | 96.6354 | 72.5869 | 1192 | 160 | 1235 | 43 | 43 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | HG002complexvar | homalt | 99.8538 | 99.8679 | 99.8397 | 60.1891 | 10584 | 14 | 10591 | 17 | 15 | 88.2353 | |
| jmaeng-gatk | INDEL | D1_5 | HG002compoundhet | * | 95.7461 | 94.1888 | 97.3557 | 66.4684 | 11524 | 711 | 11524 | 313 | 309 | 98.7220 | |
| jmaeng-gatk | INDEL | D1_5 | HG002compoundhet | het | 95.7531 | 97.8588 | 93.7361 | 78.9768 | 1691 | 37 | 1691 | 113 | 110 | 97.3451 | |
| jmaeng-gatk | INDEL | D1_5 | HG002compoundhet | hetalt | 96.4037 | 93.4123 | 99.5930 | 58.4493 | 9543 | 673 | 9543 | 39 | 39 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | HG002compoundhet | homalt | 78.1671 | 99.6564 | 64.3016 | 87.6742 | 290 | 1 | 290 | 161 | 160 | 99.3789 | |
| jmaeng-gatk | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9760 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9864 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.7050 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9403 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | func_cds | * | 97.8593 | 100.0000 | 95.8084 | 53.8674 | 159 | 0 | 160 | 7 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | func_cds | het | 96.0894 | 100.0000 | 92.4731 | 62.6506 | 85 | 0 | 86 | 7 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 33.9286 | 74 | 0 | 74 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.8204 | 92.5954 | 97.1549 | 61.9830 | 3689 | 295 | 3688 | 108 | 102 | 94.4444 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.6173 | 96.2411 | 96.9963 | 75.2089 | 1357 | 53 | 1324 | 41 | 35 | 85.3659 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.9241 | 87.1570 | 99.5086 | 30.3082 | 1588 | 234 | 1620 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6913 | 98.9362 | 92.6526 | 62.5292 | 744 | 8 | 744 | 59 | 59 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8718 | 11 | 0 | 11 | 0 | 0 | ||