PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20951-21000 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.2955 | 97.1910 | 99.4253 | 81.4499 | 173 | 5 | 173 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.5915 | 97.2222 | 100.0000 | 80.9259 | 105 | 3 | 103 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.0588 | 94.2857 | 100.0000 | 76.1905 | 33 | 2 | 35 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.5915 | 100.0000 | 97.2222 | 85.6574 | 35 | 0 | 35 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4350 | 98.8764 | 100.0000 | 76.3441 | 88 | 1 | 88 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 75.5760 | 53 | 0 | 53 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 67.2414 | 19 | 1 | 19 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 83.5052 | 16 | 0 | 16 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.0244 | 83.9080 | 94.8052 | 84.8425 | 73 | 14 | 73 | 4 | 2 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 87.7230 | 81.4815 | 95.0000 | 92.0635 | 22 | 5 | 19 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.7431 | 84.7458 | 100.0000 | 72.5389 | 50 | 9 | 53 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 40.0000 | 100.0000 | 25.0000 | 93.6508 | 1 | 0 | 1 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.0963 | 91.3481 | 97.0149 | 75.7623 | 454 | 43 | 455 | 14 | 10 | 71.4286 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.3674 | 89.4737 | 95.4545 | 87.9781 | 119 | 14 | 105 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.2805 | 91.4956 | 99.3921 | 56.4238 | 312 | 29 | 327 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 88.6792 | 23 | 0 | 23 | 7 | 6 | 85.7143 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.9225 | 92.5121 | 97.4619 | 73.8553 | 383 | 31 | 384 | 10 | 8 | 80.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.4887 | 91.5094 | 95.5556 | 87.2521 | 97 | 9 | 86 | 4 | 2 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 95.6672 | 92.3077 | 99.2806 | 52.6405 | 264 | 22 | 276 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.6667 | 100.0000 | 84.6154 | 87.8505 | 22 | 0 | 22 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.9273 | 92.5764 | 97.4006 | 82.2668 | 636 | 51 | 637 | 17 | 11 | 64.7059 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.9105 | 92.6829 | 97.2477 | 88.6221 | 228 | 18 | 212 | 6 | 2 | 33.3333 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.2111 | 91.3158 | 99.4536 | 61.2288 | 347 | 33 | 364 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.1298 | 100.0000 | 87.1429 | 91.5459 | 61 | 0 | 61 | 9 | 7 | 77.7778 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.0831 | 94.5752 | 97.6399 | 85.2261 | 1447 | 83 | 1448 | 35 | 20 | 57.1429 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.1476 | 94.4444 | 97.9133 | 88.6665 | 629 | 37 | 610 | 13 | 3 | 23.0769 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.3185 | 93.1715 | 99.6855 | 68.3267 | 614 | 45 | 634 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.1049 | 99.5122 | 91.0714 | 91.1567 | 204 | 1 | 204 | 20 | 15 | 75.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.1199 | 93.3333 | 96.9762 | 82.0124 | 448 | 32 | 449 | 14 | 10 | 71.4286 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.4291 | 95.0000 | 95.8621 | 89.7959 | 152 | 8 | 139 | 6 | 3 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 95.1677 | 91.3978 | 99.2620 | 64.3890 | 255 | 24 | 269 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.1818 | 100.0000 | 87.2340 | 88.0102 | 41 | 0 | 41 | 6 | 5 | 83.3333 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 50.0000 | 50.0000 | 50.0000 | 85.1852 | 2 | 2 | 2 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 50.0000 | 0.0000 | 94.4444 | 1 | 1 | 0 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 66.6667 | 1 | 1 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.7471 | 93.6170 | 93.8776 | 80.9339 | 44 | 3 | 46 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 100.0000 | 100.0000 | 100.0000 | 88.5496 | 15 | 0 | 15 | 0 | 0 | ||