PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20701-20750 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | D1_5 | map_siren | hetalt | 92.9936 | 86.9048 | 100.0000 | 91.3507 | 73 | 11 | 73 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_siren | homalt | 99.3571 | 99.1438 | 99.5712 | 81.3141 | 1158 | 10 | 1161 | 5 | 5 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | segdup | * | 96.8249 | 99.3654 | 94.4110 | 96.0107 | 1096 | 7 | 1098 | 65 | 2 | 3.0769 | |
| jmaeng-gatk | INDEL | D1_5 | segdup | het | 95.2904 | 99.2775 | 91.6112 | 96.4890 | 687 | 5 | 688 | 63 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.6596 | 50 | 2 | 51 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.5203 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9960 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9948 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 48.5714 | 18 | 1 | 18 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 58.8235 | 7 | 1 | 7 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | * | * | 97.9970 | 97.6008 | 98.3964 | 55.6203 | 25466 | 626 | 25465 | 415 | 366 | 88.1928 | |
| jmaeng-gatk | INDEL | D6_15 | * | het | 98.5809 | 99.1891 | 97.9801 | 63.8389 | 11498 | 94 | 11448 | 236 | 191 | 80.9322 | |
| jmaeng-gatk | INDEL | D6_15 | * | hetalt | 96.4840 | 93.6261 | 99.5219 | 32.9957 | 7653 | 521 | 7702 | 37 | 37 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | * | homalt | 98.8031 | 99.8261 | 97.8008 | 55.3272 | 6315 | 11 | 6315 | 142 | 138 | 97.1831 | |
| jmaeng-gatk | INDEL | D6_15 | HG002complexvar | * | 97.9225 | 97.3595 | 98.4921 | 58.5358 | 5162 | 140 | 5160 | 79 | 74 | 93.6709 | |
| jmaeng-gatk | INDEL | D6_15 | HG002complexvar | het | 98.8845 | 98.7179 | 99.0517 | 59.4483 | 3080 | 40 | 3029 | 29 | 25 | 86.2069 | |
| jmaeng-gatk | INDEL | D6_15 | HG002complexvar | hetalt | 93.2190 | 90.3258 | 96.3037 | 47.2880 | 915 | 98 | 964 | 37 | 37 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | HG002complexvar | homalt | 99.3614 | 99.8289 | 98.8983 | 63.0673 | 1167 | 2 | 1167 | 13 | 12 | 92.3077 | |
| jmaeng-gatk | INDEL | D6_15 | HG002compoundhet | * | 95.0402 | 94.1203 | 95.9783 | 36.0728 | 8500 | 531 | 8496 | 356 | 353 | 99.1573 | |
| jmaeng-gatk | INDEL | D6_15 | HG002compoundhet | het | 88.9799 | 98.0140 | 81.4706 | 68.2342 | 839 | 17 | 831 | 189 | 187 | 98.9418 | |
| jmaeng-gatk | INDEL | D6_15 | HG002compoundhet | hetalt | 96.5549 | 93.6940 | 99.5959 | 24.0546 | 7637 | 514 | 7641 | 31 | 31 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | HG002compoundhet | homalt | 26.0870 | 100.0000 | 15.0000 | 70.0375 | 24 | 0 | 24 | 136 | 135 | 99.2647 | |
| jmaeng-gatk | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9558 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.2754 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D6_15 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 57.0000 | 43 | 0 | 43 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 56.0606 | 29 | 0 | 29 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 58.6207 | 12 | 0 | 12 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.9102 | 91.2700 | 94.6103 | 54.6326 | 3586 | 343 | 3581 | 204 | 197 | 96.5686 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.4799 | 96.1498 | 89.0799 | 74.5628 | 924 | 37 | 881 | 108 | 102 | 94.4444 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.9768 | 87.2358 | 99.5265 | 30.0431 | 2064 | 302 | 2102 | 10 | 10 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.0016 | 99.3355 | 87.4269 | 52.3677 | 598 | 4 | 598 | 86 | 85 | 98.8372 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.1831 | 6 | 0 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.8102 | 3 | 0 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 98.2456 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.1176 | 97.7691 | 98.4687 | 60.2554 | 15689 | 358 | 15690 | 244 | 227 | 93.0328 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.3384 | 99.0709 | 97.6165 | 72.3626 | 5545 | 52 | 5529 | 135 | 121 | 89.6296 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.4991 | 95.5520 | 99.5272 | 33.1055 | 6509 | 303 | 6526 | 31 | 31 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.8981 | 99.9175 | 97.8993 | 62.0929 | 3635 | 3 | 3635 | 78 | 75 | 96.1538 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1803 | 96.5537 | 97.8151 | 57.7486 | 17062 | 609 | 17057 | 381 | 365 | 95.8005 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.5285 | 98.5118 | 96.5646 | 71.5859 | 5759 | 87 | 5706 | 203 | 191 | 94.0887 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.4782 | 93.6096 | 99.5281 | 29.2918 | 7544 | 515 | 7592 | 36 | 36 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.0566 | 99.8141 | 96.3599 | 59.7337 | 3759 | 7 | 3759 | 142 | 138 | 97.1831 | |