PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20301-20350 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | ti | map_l125_m0_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 97.2973 | 2 | 6 | 2 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l125_m0_e0 | homalt | 70.0419 | 53.9078 | 99.9587 | 78.1072 | 2421 | 2070 | 2421 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l125_m1_e0 | * | 84.6118 | 74.3855 | 98.0980 | 83.7120 | 21821 | 7514 | 21817 | 423 | 41 | 9.6927 | |
| jmaeng-gatk | SNP | ti | map_l125_m1_e0 | het | 88.5520 | 81.2876 | 97.2421 | 86.2223 | 14848 | 3418 | 14844 | 421 | 39 | 9.2637 | |
| jmaeng-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.4058 | 16 | 8 | 16 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l125_m1_e0 | homalt | 77.2828 | 62.9878 | 99.9713 | 72.8260 | 6957 | 4088 | 6957 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l125_m2_e0 | * | 85.0261 | 75.0281 | 98.0984 | 84.6739 | 22702 | 7556 | 22698 | 440 | 41 | 9.3182 | |
| jmaeng-gatk | SNP | ti | map_l125_m2_e0 | het | 88.8720 | 81.8288 | 97.2418 | 86.9822 | 15446 | 3430 | 15442 | 438 | 39 | 8.9041 | |
| jmaeng-gatk | SNP | ti | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.4192 | 16 | 8 | 16 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l125_m2_e0 | homalt | 77.8495 | 63.7436 | 99.9724 | 74.8690 | 7240 | 4118 | 7240 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l125_m2_e1 | * | 85.1656 | 75.2364 | 98.1141 | 84.6685 | 22999 | 7570 | 22995 | 442 | 41 | 9.2760 | |
| jmaeng-gatk | SNP | ti | map_l125_m2_e1 | het | 88.9909 | 82.0139 | 97.2654 | 86.9813 | 15654 | 3433 | 15650 | 440 | 39 | 8.8636 | |
| jmaeng-gatk | SNP | ti | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.4192 | 16 | 8 | 16 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l125_m2_e1 | homalt | 78.0137 | 63.9640 | 99.9727 | 74.8162 | 7329 | 4129 | 7329 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l150_m0_e0 | * | 72.7820 | 58.0842 | 97.4381 | 92.2027 | 4566 | 3295 | 4564 | 120 | 17 | 14.1667 | |
| jmaeng-gatk | SNP | ti | map_l150_m0_e0 | het | 76.1038 | 62.8605 | 96.4167 | 93.5560 | 3204 | 1893 | 3202 | 119 | 16 | 13.4454 | |
| jmaeng-gatk | SNP | ti | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.4615 | 1 | 2 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l150_m0_e0 | homalt | 66.0199 | 49.2937 | 99.9266 | 83.9216 | 1361 | 1400 | 1361 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l150_m1_e0 | * | 80.4694 | 68.3289 | 97.8561 | 87.7017 | 13469 | 6243 | 13465 | 295 | 34 | 11.5254 | |
| jmaeng-gatk | SNP | ti | map_l150_m1_e0 | het | 84.7465 | 75.2789 | 96.9381 | 89.5763 | 9312 | 3058 | 9308 | 294 | 33 | 11.2245 | |
| jmaeng-gatk | SNP | ti | map_l150_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.1739 | 9 | 6 | 9 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l150_m1_e0 | homalt | 72.2900 | 56.6125 | 99.9759 | 78.8887 | 4148 | 3179 | 4148 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l150_m2_e0 | * | 81.1449 | 69.3009 | 97.8719 | 88.3988 | 14215 | 6297 | 14211 | 309 | 34 | 11.0032 | |
| jmaeng-gatk | SNP | ti | map_l150_m2_e0 | het | 85.2876 | 76.1276 | 96.9535 | 90.1394 | 9806 | 3075 | 9802 | 308 | 33 | 10.7143 | |
| jmaeng-gatk | SNP | ti | map_l150_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.2331 | 9 | 6 | 9 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l150_m2_e0 | homalt | 73.2296 | 57.7731 | 99.9773 | 80.4374 | 4400 | 3216 | 4400 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l150_m2_e1 | * | 81.2473 | 69.4542 | 97.8644 | 88.4201 | 14393 | 6330 | 14389 | 314 | 34 | 10.8280 | |
| jmaeng-gatk | SNP | ti | map_l150_m2_e1 | het | 85.3846 | 76.2889 | 96.9428 | 90.1640 | 9929 | 3086 | 9925 | 313 | 33 | 10.5431 | |
| jmaeng-gatk | SNP | ti | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.2331 | 9 | 6 | 9 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l150_m2_e1 | homalt | 73.3394 | 57.9098 | 99.9776 | 80.4132 | 4455 | 3238 | 4455 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l250_m0_e0 | * | 64.0900 | 47.8102 | 97.1810 | 98.0371 | 655 | 715 | 655 | 19 | 2 | 10.5263 | |
| jmaeng-gatk | SNP | ti | map_l250_m0_e0 | het | 64.8227 | 48.9293 | 96.0084 | 98.4090 | 457 | 477 | 457 | 19 | 2 | 10.5263 | |
| jmaeng-gatk | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | ti | map_l250_m0_e0 | homalt | 62.4606 | 45.4128 | 100.0000 | 95.4774 | 198 | 238 | 198 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l250_m1_e0 | * | 69.7263 | 54.2477 | 97.5648 | 96.1076 | 2484 | 2095 | 2484 | 62 | 7 | 11.2903 | |
| jmaeng-gatk | SNP | ti | map_l250_m1_e0 | het | 72.8227 | 58.4569 | 96.5498 | 96.7644 | 1735 | 1233 | 1735 | 62 | 7 | 11.2903 | |
| jmaeng-gatk | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | ti | map_l250_m1_e0 | homalt | 63.5823 | 46.6086 | 100.0000 | 92.3540 | 749 | 858 | 749 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l250_m2_e0 | * | 71.2437 | 56.0503 | 97.7368 | 96.1742 | 2807 | 2201 | 2807 | 65 | 8 | 12.3077 | |
| jmaeng-gatk | SNP | ti | map_l250_m2_e0 | het | 74.4705 | 60.5101 | 96.8043 | 96.7872 | 1969 | 1285 | 1969 | 65 | 8 | 12.3077 | |
| jmaeng-gatk | SNP | ti | map_l250_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.8636 | 1 | 4 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l250_m2_e0 | homalt | 64.7332 | 47.8559 | 100.0000 | 92.8296 | 837 | 912 | 837 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l250_m2_e1 | * | 71.3857 | 56.2254 | 97.7397 | 96.1904 | 2854 | 2222 | 2854 | 66 | 8 | 12.1212 | |
| jmaeng-gatk | SNP | ti | map_l250_m2_e1 | het | 74.6274 | 60.7154 | 96.8101 | 96.8027 | 2003 | 1296 | 2003 | 66 | 8 | 12.1212 | |
| jmaeng-gatk | SNP | ti | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.8636 | 1 | 4 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l250_m2_e1 | homalt | 64.8360 | 47.9684 | 100.0000 | 92.8276 | 850 | 922 | 850 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_siren | * | 94.5677 | 90.5256 | 98.9876 | 65.0046 | 90847 | 9508 | 90832 | 929 | 92 | 9.9031 | |
| jmaeng-gatk | SNP | ti | map_siren | het | 96.0962 | 93.8396 | 98.4641 | 69.3151 | 58539 | 3843 | 58530 | 913 | 76 | 8.3242 | |
| jmaeng-gatk | SNP | ti | map_siren | hetalt | 88.6792 | 82.4561 | 95.9184 | 81.0078 | 47 | 10 | 47 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_siren | homalt | 91.9235 | 85.0855 | 99.9566 | 52.7056 | 32261 | 5655 | 32255 | 14 | 14 | 100.0000 | |