PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20201-20250 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | tv | map_l150_m0_e0 | homalt | 64.3185 | 47.4398 | 99.8415 | 86.2587 | 630 | 698 | 630 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l150_m1_e0 | * | 79.2356 | 67.0913 | 96.7482 | 88.9242 | 7321 | 3591 | 7319 | 246 | 7 | 2.8455 | |
| jmaeng-gatk | SNP | tv | map_l150_m1_e0 | het | 83.3948 | 74.0426 | 95.4512 | 90.5818 | 5143 | 1803 | 5141 | 245 | 6 | 2.4490 | |
| jmaeng-gatk | SNP | tv | map_l150_m1_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 94.4444 | 11 | 9 | 11 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l150_m1_e0 | homalt | 70.8865 | 54.9164 | 99.9539 | 80.1411 | 2167 | 1779 | 2167 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l150_m2_e0 | * | 79.9418 | 68.0934 | 96.7823 | 89.5425 | 7732 | 3623 | 7730 | 257 | 7 | 2.7237 | |
| jmaeng-gatk | SNP | tv | map_l150_m2_e0 | het | 83.9830 | 74.9448 | 95.5001 | 91.0642 | 5435 | 1817 | 5433 | 256 | 6 | 2.3438 | |
| jmaeng-gatk | SNP | tv | map_l150_m2_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 95.2381 | 11 | 9 | 11 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l150_m2_e0 | homalt | 71.7739 | 55.9882 | 99.9563 | 81.6747 | 2286 | 1797 | 2286 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | * | 80.0731 | 68.3012 | 96.7480 | 89.5225 | 7856 | 3646 | 7854 | 264 | 8 | 3.0303 | |
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | het | 84.1017 | 75.1633 | 95.4530 | 91.0507 | 5523 | 1825 | 5521 | 263 | 7 | 2.6616 | |
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | hetalt | 70.9677 | 55.0000 | 100.0000 | 95.2381 | 11 | 9 | 11 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | homalt | 71.9219 | 56.1684 | 99.9570 | 81.5898 | 2322 | 1812 | 2322 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l250_m0_e0 | * | 61.3757 | 45.4902 | 94.3089 | 98.2747 | 348 | 417 | 348 | 21 | 1 | 4.7619 | |
| jmaeng-gatk | SNP | tv | map_l250_m0_e0 | het | 61.3583 | 45.8042 | 92.9078 | 98.5051 | 262 | 310 | 262 | 20 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | tv | map_l250_m0_e0 | homalt | 61.4286 | 44.5596 | 98.8506 | 96.4620 | 86 | 107 | 86 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l250_m1_e0 | * | 67.4516 | 51.9456 | 96.1538 | 96.4328 | 1375 | 1272 | 1375 | 55 | 2 | 3.6364 | |
| jmaeng-gatk | SNP | tv | map_l250_m1_e0 | het | 70.8070 | 56.4633 | 94.9200 | 96.9245 | 1009 | 778 | 1009 | 54 | 1 | 1.8519 | |
| jmaeng-gatk | SNP | tv | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | tv | map_l250_m1_e0 | homalt | 59.8528 | 42.7570 | 99.7275 | 93.2050 | 366 | 490 | 366 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l250_m2_e0 | * | 69.2000 | 54.0250 | 96.2299 | 96.4918 | 1557 | 1325 | 1557 | 61 | 2 | 3.2787 | |
| jmaeng-gatk | SNP | tv | map_l250_m2_e0 | het | 72.5709 | 58.7113 | 94.9958 | 96.9665 | 1139 | 801 | 1139 | 60 | 1 | 1.6667 | |
| jmaeng-gatk | SNP | tv | map_l250_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 99.3243 | 1 | 4 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l250_m2_e0 | homalt | 61.5498 | 44.5037 | 99.7608 | 93.5174 | 417 | 520 | 417 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l250_m2_e1 | * | 69.5004 | 54.3896 | 96.2379 | 96.4989 | 1586 | 1330 | 1586 | 62 | 2 | 3.2258 | |
| jmaeng-gatk | SNP | tv | map_l250_m2_e1 | het | 72.8186 | 59.0331 | 95.0041 | 96.9764 | 1160 | 805 | 1160 | 61 | 1 | 1.6393 | |
| jmaeng-gatk | SNP | tv | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 99.3243 | 1 | 4 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l250_m2_e1 | homalt | 61.9534 | 44.9260 | 99.7653 | 93.4872 | 425 | 521 | 425 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_siren | * | 92.8750 | 88.1232 | 98.1685 | 71.3358 | 40475 | 5455 | 40467 | 755 | 31 | 4.1060 | |
| jmaeng-gatk | SNP | tv | map_siren | het | 94.8661 | 92.5932 | 97.2533 | 75.2567 | 26490 | 2119 | 26485 | 748 | 25 | 3.3423 | |
| jmaeng-gatk | SNP | tv | map_siren | hetalt | 88.0000 | 81.4815 | 95.6522 | 83.0882 | 66 | 15 | 66 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | SNP | tv | map_siren | homalt | 89.3303 | 80.7367 | 99.9713 | 58.2484 | 13919 | 3321 | 13916 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | SNP | tv | segdup | * | 98.1687 | 99.3085 | 97.0548 | 94.6921 | 8473 | 59 | 8469 | 257 | 8 | 3.1128 | |
| jmaeng-gatk | SNP | tv | segdup | het | 97.3848 | 99.3758 | 95.4719 | 95.8451 | 5254 | 33 | 5250 | 249 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.5685 | 7 | 0 | 7 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | segdup | homalt | 99.4735 | 99.1970 | 99.7516 | 89.7966 | 3212 | 26 | 3212 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 50.0000 | 70 | 2 | 70 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 47.5410 | 32 | 1 | 32 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.8519 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.9111 | 99.8223 | 100.0000 | 64.1566 | 1685 | 3 | 1685 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 96.7742 | 93.7500 | 100.0000 | 97.9564 | 15 | 1 | 15 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 94.7368 | 90.0000 | 100.0000 | 98.3364 | 9 | 1 | 9 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.8750 | 6 | 0 | 6 | 0 | 0 | ||