PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20151-20200 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 84.4600 | 82.3881 | 86.6388 | 62.5342 | 828 | 177 | 830 | 128 | 125 | 97.6562 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 87.3841 | 93.4028 | 82.0941 | 65.3887 | 538 | 38 | 541 | 118 | 116 | 98.3051 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 100.0000 | 85.7143 | 92.3077 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6666 | 99.6812 | 99.6520 | 39.8884 | 3439 | 11 | 3436 | 12 | 2 | 16.6667 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6261 | 99.8129 | 99.4400 | 42.7465 | 2134 | 4 | 2131 | 12 | 2 | 16.6667 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7706 | 99.5423 | 100.0000 | 34.4550 | 1305 | 6 | 1305 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.5507 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 98.2456 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | tv | map_l100_m0_e0 | * | 81.7650 | 70.7957 | 96.7567 | 85.8314 | 7847 | 3237 | 7846 | 263 | 11 | 4.1825 | |
| jmaeng-gatk | SNP | tv | map_l100_m0_e0 | het | 84.7992 | 76.2808 | 95.4593 | 88.1483 | 5509 | 1713 | 5508 | 262 | 10 | 3.8168 | |
| jmaeng-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 72.0000 | 56.2500 | 100.0000 | 93.2331 | 9 | 7 | 9 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l100_m0_e0 | homalt | 75.4210 | 60.5564 | 99.9571 | 72.3081 | 2329 | 1517 | 2329 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l100_m1_e0 | * | 88.1452 | 80.4375 | 97.4866 | 80.6623 | 19708 | 4793 | 19704 | 508 | 16 | 3.1496 | |
| jmaeng-gatk | SNP | tv | map_l100_m1_e0 | het | 91.2990 | 86.7484 | 96.3534 | 83.6231 | 13374 | 2043 | 13370 | 506 | 14 | 2.7668 | |
| jmaeng-gatk | SNP | tv | map_l100_m1_e0 | hetalt | 80.0000 | 68.2927 | 96.5517 | 89.6797 | 28 | 13 | 28 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l100_m1_e0 | homalt | 82.1629 | 69.7335 | 99.9841 | 67.6746 | 6306 | 2737 | 6306 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e0 | * | 88.3689 | 80.8253 | 97.4657 | 81.7790 | 20233 | 4800 | 20229 | 526 | 16 | 3.0418 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e0 | het | 91.4492 | 87.0444 | 96.3236 | 84.5266 | 13733 | 2044 | 13729 | 524 | 14 | 2.6718 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e0 | hetalt | 80.5556 | 69.0476 | 96.6667 | 90.4762 | 29 | 13 | 29 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e0 | homalt | 82.5067 | 70.2301 | 99.9845 | 69.8682 | 6471 | 2743 | 6471 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | * | 88.4662 | 80.9714 | 97.4899 | 81.7669 | 20472 | 4811 | 20468 | 527 | 16 | 3.0361 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | het | 91.5298 | 87.1628 | 96.3575 | 84.5264 | 13892 | 2046 | 13888 | 525 | 14 | 2.6667 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | hetalt | 81.0811 | 69.7674 | 96.7742 | 90.1899 | 30 | 13 | 30 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | homalt | 82.6342 | 70.4150 | 99.9847 | 69.7916 | 6550 | 2752 | 6550 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l125_m0_e0 | * | 75.4933 | 61.9967 | 96.5015 | 90.4918 | 4111 | 2520 | 4110 | 149 | 7 | 4.6980 | |
| jmaeng-gatk | SNP | tv | map_l125_m0_e0 | het | 78.5795 | 66.8939 | 95.2119 | 92.0071 | 2944 | 1457 | 2943 | 148 | 6 | 4.0541 | |
| jmaeng-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 36.3636 | 22.2222 | 100.0000 | 98.3051 | 2 | 7 | 2 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l125_m0_e0 | homalt | 68.7924 | 52.4538 | 99.9142 | 80.5764 | 1165 | 1056 | 1165 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l125_m1_e0 | * | 83.4629 | 73.2830 | 96.9274 | 85.3732 | 11737 | 4279 | 11735 | 372 | 13 | 3.4946 | |
| jmaeng-gatk | SNP | tv | map_l125_m1_e0 | het | 87.4372 | 80.5254 | 95.6471 | 87.5400 | 8154 | 1972 | 8152 | 371 | 12 | 3.2345 | |
| jmaeng-gatk | SNP | tv | map_l125_m1_e0 | hetalt | 77.5510 | 63.3333 | 100.0000 | 91.8103 | 19 | 11 | 19 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l125_m1_e0 | homalt | 75.6286 | 60.8191 | 99.9719 | 74.7843 | 3564 | 2296 | 3564 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l125_m2_e0 | * | 83.8941 | 73.9220 | 96.9762 | 86.2792 | 12189 | 4300 | 12187 | 380 | 13 | 3.4211 | |
| jmaeng-gatk | SNP | tv | map_l125_m2_e0 | het | 87.7835 | 81.0668 | 95.7136 | 88.2752 | 8465 | 1977 | 8463 | 379 | 12 | 3.1662 | |
| jmaeng-gatk | SNP | tv | map_l125_m2_e0 | hetalt | 77.5510 | 63.3333 | 100.0000 | 93.0909 | 19 | 11 | 19 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l125_m2_e0 | homalt | 76.2110 | 61.5755 | 99.9730 | 76.6962 | 3705 | 2312 | 3705 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l125_m2_e1 | * | 84.0047 | 74.0950 | 96.9745 | 86.2788 | 12342 | 4315 | 12340 | 385 | 14 | 3.6364 | |
| jmaeng-gatk | SNP | tv | map_l125_m2_e1 | het | 87.8827 | 81.2376 | 95.7119 | 88.2796 | 8573 | 1980 | 8571 | 384 | 13 | 3.3854 | |
| jmaeng-gatk | SNP | tv | map_l125_m2_e1 | hetalt | 77.5510 | 63.3333 | 100.0000 | 93.0909 | 19 | 11 | 19 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l125_m2_e1 | homalt | 76.3359 | 61.7386 | 99.9733 | 76.6438 | 3750 | 2324 | 3750 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l150_m0_e0 | * | 71.1604 | 56.3967 | 96.3949 | 93.3607 | 2354 | 1820 | 2353 | 88 | 6 | 6.8182 | |
| jmaeng-gatk | SNP | tv | map_l150_m0_e0 | het | 74.0589 | 60.6050 | 95.1907 | 94.3590 | 1723 | 1120 | 1722 | 87 | 5 | 5.7471 | |
| jmaeng-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.0476 | 1 | 2 | 1 | 0 | 0 | ||