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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
151-200 / 86044 show all
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.8558
99.8558
99.8558
64.1880
13852138521
50.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.8619
99.8160
99.9079
64.2822
21704217021
50.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8959
99.7921
100.0000
53.7572
480148000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.6495
99.7661
99.5333
55.1309
853285341
25.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.7381
99.7754
99.7008
54.7087
13333133341
25.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7694
99.7050
99.8338
75.7174
540716540792
22.2222
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
92.2280
1501500
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.4197
99.4416
99.3979
75.9193
90825190805515
27.2727
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.5504
99.5402
99.5606
75.8969
1450467145026417
26.5625
rpoplin-dv42SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8811
99.8613
99.9009
61.7921
100831410083102
20.0000
rpoplin-dv42SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
81.2500
1211200
rpoplin-dv42SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.8491
99.8406
99.8576
65.2848
1754028175272517
68.0000
rpoplin-dv42SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.8590
99.8446
99.8734
64.1005
2763543276223519
54.2857
rpoplin-dv42SNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6183
99.6183
99.6183
66.9401
522252221
50.0000
rpoplin-dv42SNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
99.3435
99.1935
99.4939
70.5690
984898351
20.0000
rpoplin-dv42SNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.4386
99.3404
99.5370
69.4360
150610150572
28.5714
rpoplin-dv42SNPtvfunc_cdshomalt
99.9706
99.9413
100.0000
27.8695
17031170300
rpoplin-dv42SNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
60.0000
1001000
rpoplin-dv42SNPtvfunc_cdshet
99.8871
99.9247
99.8495
30.5098
26552265441
25.0000
rpoplin-dv42SNPtvfunc_cds*
99.9199
99.9314
99.9085
29.6249
43683436741
25.0000
rpoplin-dv42SNPtvdecoyhomalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvdecoyhetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvdecoyhet
0.0000
100.0000
00000
rpoplin-dv42SNPtvdecoy*
0.0000
100.0000
00000
rpoplin-dv42SNPtvHG002compoundhethomalt
99.7491
99.8229
99.6753
42.8668
338263377119
81.8182
rpoplin-dv42SNPtvHG002compoundhethetalt
99.9420
99.8840
100.0000
22.1519
861186100
rpoplin-dv42SNPtvHG002compoundhethet
99.5284
99.3794
99.6779
54.5836
46442946421510
66.6667
rpoplin-dv42SNPtvHG002compoundhet*
99.6523
99.5965
99.7081
48.4905
88873688802619
73.0769
rpoplin-dv42SNPtvHG002complexvarhomalt
99.9385
99.9201
99.9569
22.8530
9503576950114137
90.2439
rpoplin-dv42SNPtvHG002complexvarhetalt
99.1974
99.6774
98.7220
36.2525
309130944
100.0000
rpoplin-dv42SNPtvHG002complexvarhet
99.8928
99.8249
99.9608
21.2882
1504672641503825946
77.9661
rpoplin-dv42SNPtvHG002complexvar*
99.9096
99.8615
99.9577
21.9240
24581134124570210487
83.6538
rpoplin-dv42SNPtv*homalt
99.9702
99.9650
99.9753
20.9652
3769911323769709351
54.8387
rpoplin-dv42SNPtv*hetalt
99.4854
99.8852
99.0888
49.8858
870187088
100.0000
rpoplin-dv42SNPtv*het
99.9398
99.9275
99.9522
22.4174
591267429591187283104
36.7491
rpoplin-dv42SNPtv**
99.9512
99.9420
99.9604
21.8980
969128562969027384163
42.4479
rpoplin-dv42SNPtitech_badpromotershomalt
98.7952
100.0000
97.6190
46.1538
4104111
100.0000
rpoplin-dv42SNPtitech_badpromotershetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNPtitech_badpromotershet
98.8506
97.7273
100.0000
44.1558
4314300
rpoplin-dv42SNPtitech_badpromoters*
98.8235
98.8235
98.8235
45.1613
8418411
100.0000