PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18251-18300 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 30.6992 | 20.9726 | 57.2507 | 58.7917 | 1449 | 5460 | 1441 | 1076 | 1033 | 96.0037 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 64.5916 | 75.6355 | 56.3620 | 56.7025 | 1220 | 393 | 1227 | 950 | 942 | 99.1579 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.3228 | 0.0000 | 0.0000 | 15 | 4632 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 43.2760 | 32.9738 | 62.9412 | 68.5185 | 214 | 435 | 214 | 126 | 91 | 72.2222 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 31.1683 | 21.1733 | 59.0373 | 57.3384 | 1256 | 4676 | 1251 | 868 | 834 | 96.0829 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 66.7282 | 78.5285 | 58.0110 | 55.6155 | 1046 | 286 | 1050 | 760 | 754 | 99.2105 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.2234 | 0.0000 | 0.0000 | 9 | 4020 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 45.6818 | 35.2014 | 65.0485 | 65.2418 | 201 | 370 | 201 | 108 | 80 | 74.0741 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 43.4601 | 31.9182 | 68.0775 | 69.7400 | 2684 | 5725 | 2670 | 1252 | 1202 | 96.0064 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 72.3083 | 81.8625 | 64.7512 | 68.9679 | 2013 | 446 | 2017 | 1098 | 1086 | 98.9071 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.3562 | 0.0000 | 0.0000 | 17 | 4755 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 65.8532 | 55.5178 | 80.9170 | 72.3914 | 654 | 524 | 653 | 154 | 116 | 75.3247 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 61.8393 | 51.5519 | 77.2561 | 71.5347 | 8288 | 7789 | 8261 | 2432 | 2302 | 94.6546 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 78.6552 | 86.4019 | 72.1833 | 72.7812 | 5547 | 873 | 5561 | 2143 | 2067 | 96.4536 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.5767 | 0.0000 | 0.0000 | 34 | 5862 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 80.1154 | 71.9755 | 90.3312 | 67.7249 | 2707 | 1054 | 2700 | 289 | 235 | 81.3149 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 43.8042 | 29.8151 | 82.5243 | 69.3041 | 1709 | 4023 | 1700 | 360 | 316 | 87.7778 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.2568 | 87.6742 | 84.8845 | 71.5339 | 1195 | 168 | 1213 | 216 | 204 | 94.4444 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.5782 | 0.0000 | 0.0000 | 22 | 3783 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 81.8991 | 87.2340 | 77.1791 | 62.6848 | 492 | 72 | 487 | 144 | 112 | 77.7778 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 5.5046 | 2.9126 | 50.0000 | 97.1429 | 6 | 200 | 1 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 36.3636 | 22.2222 | 100.0000 | 98.2456 | 6 | 21 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 179 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 92.3077 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l150_m0_e0 | homalt | 98.3835 | 96.9938 | 99.8136 | 78.2964 | 2678 | 83 | 2678 | 5 | 4 | 80.0000 | |
| jpowers-varprowl | SNP | ti | map_l150_m1_e0 | * | 97.2860 | 96.5605 | 98.0225 | 78.7128 | 19034 | 678 | 19034 | 384 | 140 | 36.4583 | |
| jpowers-varprowl | SNP | ti | map_l150_m1_e0 | het | 96.3303 | 95.7074 | 96.9615 | 80.9022 | 11839 | 531 | 11839 | 371 | 130 | 35.0404 | |
| jpowers-varprowl | SNP | ti | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l150_m1_e0 | homalt | 99.0024 | 98.1984 | 99.8196 | 73.5826 | 7195 | 132 | 7195 | 13 | 10 | 76.9231 | |
| jpowers-varprowl | SNP | ti | map_l150_m2_e0 | * | 97.3631 | 96.6654 | 98.0710 | 80.0739 | 19828 | 684 | 19828 | 390 | 140 | 35.8974 | |
| jpowers-varprowl | SNP | ti | map_l150_m2_e0 | het | 96.4300 | 95.8311 | 97.0364 | 82.0218 | 12344 | 537 | 12344 | 377 | 130 | 34.4828 | |
| jpowers-varprowl | SNP | ti | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l150_m2_e0 | homalt | 99.0406 | 98.2668 | 99.8266 | 75.5854 | 7484 | 132 | 7484 | 13 | 10 | 76.9231 | |
| jpowers-varprowl | SNP | ti | map_l150_m2_e1 | * | 97.3682 | 96.6752 | 98.0713 | 80.1400 | 20034 | 689 | 20034 | 394 | 141 | 35.7868 | |
| jpowers-varprowl | SNP | ti | map_l150_m2_e1 | het | 96.4360 | 95.8433 | 97.0362 | 82.0973 | 12474 | 541 | 12474 | 381 | 131 | 34.3832 | |
| jpowers-varprowl | SNP | ti | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l150_m2_e1 | homalt | 99.0436 | 98.2712 | 99.8283 | 75.6142 | 7560 | 133 | 7560 | 13 | 10 | 76.9231 | |
| jpowers-varprowl | SNP | ti | map_l250_m0_e0 | * | 93.0946 | 92.9927 | 93.1968 | 94.8911 | 1274 | 96 | 1274 | 93 | 19 | 20.4301 | |
| jpowers-varprowl | SNP | ti | map_l250_m0_e0 | het | 90.9574 | 91.5418 | 90.3805 | 95.3348 | 855 | 79 | 855 | 91 | 17 | 18.6813 | |
| jpowers-varprowl | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l250_m0_e0 | homalt | 97.7830 | 96.1009 | 99.5249 | 93.5021 | 419 | 17 | 419 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | SNP | ti | map_l250_m1_e0 | * | 95.2339 | 94.6932 | 95.7809 | 91.0914 | 4336 | 243 | 4336 | 191 | 57 | 29.8429 | |
| jpowers-varprowl | SNP | ti | map_l250_m1_e0 | het | 93.7195 | 93.7668 | 93.6722 | 91.9387 | 2783 | 185 | 2783 | 188 | 54 | 28.7234 | |
| jpowers-varprowl | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l250_m1_e0 | homalt | 98.1979 | 96.6397 | 99.8072 | 88.8547 | 1553 | 54 | 1553 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | SNP | ti | map_l250_m2_e0 | * | 95.5047 | 95.0280 | 95.9863 | 91.4473 | 4759 | 249 | 4759 | 199 | 57 | 28.6432 | |
| jpowers-varprowl | SNP | ti | map_l250_m2_e0 | het | 94.0906 | 94.1918 | 93.9896 | 92.1804 | 3065 | 189 | 3065 | 196 | 54 | 27.5510 | |