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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18001-18050 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.6086 | 96.6584 | 94.5813 | 87.2366 | 6653 | 230 | 6720 | 385 | 17 | 4.4156 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.4849 | 99.6935 | 89.7936 | 83.3014 | 3903 | 12 | 3915 | 445 | 231 | 51.9101 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 93.8037 | 98.1533 | 89.8233 | 81.9505 | 44858 | 844 | 44997 | 5098 | 525 | 10.2982 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 91.9958 | 97.3948 | 87.1640 | 83.7213 | 27964 | 748 | 28079 | 4135 | 89 | 2.1524 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.0066 | 99.5228 | 94.6144 | 77.5514 | 16894 | 81 | 16918 | 963 | 436 | 45.2752 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.1147 | 97.5960 | 92.7564 | 74.4795 | 9459 | 233 | 9540 | 745 | 245 | 32.8859 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.5170 | 96.4240 | 94.6270 | 76.4781 | 6013 | 223 | 6076 | 345 | 14 | 4.0580 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.4249 | 99.7395 | 89.6480 | 70.2838 | 3446 | 9 | 3464 | 400 | 231 | 57.7500 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.4348 | 88.0952 | 74.0000 | 97.4937 | 37 | 5 | 37 | 13 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.9661 | 85.1852 | 71.8750 | 97.8261 | 23 | 4 | 23 | 9 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.8485 | 93.3333 | 77.7778 | 96.5583 | 14 | 1 | 14 | 4 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.3080 | 99.3771 | 99.2391 | 58.1058 | 17070 | 107 | 17085 | 131 | 66 | 50.3817 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3222 | 99.1249 | 99.5202 | 58.6425 | 10987 | 97 | 10994 | 53 | 8 | 15.0943 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.3232 | 99.9179 | 98.7356 | 57.1091 | 6083 | 5 | 6091 | 78 | 58 | 74.3590 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.9586 | 98.9331 | 97.0031 | 50.6413 | 17989 | 194 | 18029 | 557 | 149 | 26.7504 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.7673 | 98.4344 | 97.1092 | 52.3550 | 11254 | 179 | 11287 | 336 | 18 | 5.3571 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.3156 | 99.8517 | 96.8261 | 47.4887 | 6735 | 10 | 6742 | 221 | 131 | 59.2760 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.4312 | 90.9091 | 73.7430 | 94.9535 | 130 | 13 | 132 | 47 | 9 | 19.1489 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.9954 | 90.1961 | 76.8595 | 95.2900 | 92 | 10 | 93 | 28 | 3 | 10.7143 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 77.9385 | 92.6829 | 67.2414 | 94.0695 | 38 | 3 | 39 | 19 | 6 | 31.5789 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7867 | 98.9531 | 98.6209 | 43.1645 | 7278 | 77 | 7294 | 102 | 43 | 42.1569 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7720 | 98.3536 | 99.1941 | 45.0969 | 4540 | 76 | 4554 | 37 | 1 | 2.7027 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.8278 | 100.0000 | 97.6827 | 39.6904 | 2738 | 0 | 2740 | 65 | 42 | 64.6154 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 90.0000 | 100.0000 | 81.8182 | 97.2637 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.3333 | 100.0000 | 87.5000 | 97.4359 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 96.6667 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l100_m0_e0 | * | 97.2063 | 96.7297 | 97.6876 | 74.3551 | 31767 | 1074 | 31768 | 752 | 236 | 31.3830 | |
| jpowers-varprowl | SNP | * | map_l100_m0_e0 | het | 96.3156 | 96.0340 | 96.5990 | 77.1422 | 20364 | 841 | 20365 | 717 | 214 | 29.8466 | |
| jpowers-varprowl | SNP | * | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||