PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17601-17650 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m1_e0 | het | 95.2381 | 90.9091 | 100.0000 | 93.9394 | 10 | 1 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4912 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.5055 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e0 | * | 97.6744 | 95.4545 | 100.0000 | 93.9058 | 21 | 1 | 22 | 0 | 0 | ||
| jpowers-varprowl | SNP | tv | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | map_l250_m2_e0 | homalt | 97.9437 | 96.5848 | 99.3414 | 90.7971 | 905 | 32 | 905 | 6 | 2 | 33.3333 | |
| jpowers-varprowl | SNP | tv | map_l250_m2_e1 | * | 94.2423 | 94.5816 | 93.9053 | 92.0320 | 2758 | 158 | 2758 | 179 | 36 | 20.1117 | |
| jpowers-varprowl | SNP | tv | map_l250_m2_e1 | het | 92.6168 | 93.8422 | 91.4229 | 92.4770 | 1844 | 121 | 1844 | 173 | 34 | 19.6532 | |
| jpowers-varprowl | SNP | tv | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | map_l250_m2_e1 | homalt | 97.9636 | 96.6173 | 99.3478 | 90.8449 | 914 | 32 | 914 | 6 | 2 | 33.3333 | |
| jpowers-varprowl | SNP | tv | map_siren | * | 98.2043 | 98.2321 | 98.1765 | 64.5026 | 45118 | 812 | 45118 | 838 | 186 | 22.1957 | |
| jpowers-varprowl | SNP | tv | map_siren | het | 97.6371 | 97.8538 | 97.4214 | 66.9739 | 27995 | 614 | 27995 | 741 | 114 | 15.3846 | |
| jpowers-varprowl | SNP | tv | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 81 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | map_siren | homalt | 99.3790 | 99.3213 | 99.4367 | 59.4375 | 17123 | 117 | 17123 | 97 | 72 | 74.2268 | |
| jpowers-varprowl | SNP | tv | segdup | * | 97.6941 | 99.0272 | 96.3964 | 93.1340 | 8449 | 83 | 8453 | 316 | 33 | 10.4430 | |
| jpowers-varprowl | SNP | tv | segdup | het | 96.8798 | 98.6193 | 95.2007 | 93.8679 | 5214 | 73 | 5217 | 263 | 4 | 1.5209 | |
| jpowers-varprowl | SNP | tv | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 7 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | segdup | homalt | 99.1421 | 99.9074 | 98.3886 | 91.4237 | 3235 | 3 | 3236 | 53 | 29 | 54.7170 | |
| jpowers-varprowl | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | tv | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | tv | tech_badpromoters | * | 93.9597 | 97.2222 | 90.9091 | 63.5071 | 70 | 2 | 70 | 7 | 1 | 14.2857 | |
| jpowers-varprowl | SNP | tv | tech_badpromoters | het | 88.8889 | 96.9697 | 82.0513 | 68.2927 | 32 | 1 | 32 | 7 | 1 | 14.2857 | |
| jpowers-varprowl | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | tech_badpromoters | homalt | 98.7013 | 97.4359 | 100.0000 | 56.8182 | 38 | 1 | 38 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 89.1674 | 84.1986 | 94.7593 | 66.6240 | 2238 | 420 | 2224 | 123 | 104 | 84.5528 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.4096 | 96.1426 | 94.6877 | 69.8615 | 1321 | 53 | 1319 | 74 | 68 | 91.8919 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.3165 | 0.0000 | 0.0000 | 1 | 315 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 94.7458 | 94.6281 | 94.8637 | 60.4149 | 916 | 52 | 905 | 49 | 36 | 73.4694 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 71.5827 | 62.3493 | 84.0263 | 65.9228 | 2431 | 1468 | 2425 | 461 | 430 | 93.2755 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 84.8128 | 90.0176 | 80.1769 | 69.3559 | 1533 | 170 | 1541 | 381 | 365 | 95.8005 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 1.4147 | 0.0000 | 0.0000 | 16 | 1115 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 87.0329 | 82.8169 | 91.7012 | 56.1220 | 882 | 183 | 884 | 80 | 65 | 81.2500 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 19.8805 | 11.8959 | 60.4651 | 91.9021 | 32 | 237 | 26 | 17 | 11 | 64.7059 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 69.9301 | 58.8235 | 86.2069 | 92.6952 | 30 | 21 | 25 | 4 | 1 | 25.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.4608 | 0.0000 | 0.0000 | 1 | 216 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 13.3333 | 100.0000 | 7.1429 | 89.5522 | 1 | 0 | 1 | 13 | 10 | 76.9231 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 75.2854 | 64.8571 | 89.7098 | 61.7172 | 681 | 369 | 680 | 78 | 71 | 91.0256 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 91.0964 | 94.2553 | 88.1423 | 65.1755 | 443 | 27 | 446 | 60 | 58 | 96.6667 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 1.2780 | 0.0000 | 0.0000 | 4 | 309 | 0 | 0 | 0 | ||