PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17501-17550 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.8130 | 98.1907 | 99.4431 | 58.6332 | 3799 | 70 | 3750 | 21 | 16 | 76.1905 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.1659 | 93.1102 | 99.4290 | 31.4906 | 6622 | 490 | 6617 | 38 | 38 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.9025 | 98.1098 | 99.7081 | 39.8904 | 2751 | 53 | 2733 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.3258 | 97.0402 | 99.6459 | 43.8344 | 10754 | 328 | 10693 | 38 | 34 | 89.4737 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2002 | 98.7477 | 99.6569 | 58.1790 | 3233 | 41 | 3195 | 11 | 7 | 63.6364 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.3694 | 95.3108 | 99.5190 | 31.4561 | 5183 | 255 | 5172 | 25 | 25 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.2779 | 98.6498 | 99.9141 | 39.6579 | 2338 | 32 | 2326 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.5965 | 95.7727 | 99.4912 | 45.8166 | 14160 | 625 | 14078 | 72 | 63 | 87.5000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8308 | 98.2456 | 99.4230 | 59.7380 | 4368 | 78 | 4308 | 25 | 16 | 64.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.1709 | 93.1280 | 99.4195 | 32.5705 | 6681 | 493 | 6679 | 39 | 39 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.0126 | 98.2938 | 99.7419 | 42.5046 | 3111 | 54 | 3091 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.5520 | 95.8237 | 99.3437 | 50.3216 | 16933 | 738 | 16803 | 111 | 74 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5300 | 97.9644 | 99.1021 | 62.8102 | 5727 | 119 | 5629 | 51 | 17 | 33.3333 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.1173 | 93.0761 | 99.3641 | 35.8818 | 7501 | 558 | 7500 | 48 | 48 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0231 | 98.3802 | 99.6744 | 47.3579 | 3705 | 61 | 3674 | 12 | 9 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.8903 | 96.4792 | 99.3433 | 38.3411 | 9125 | 333 | 9076 | 60 | 45 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.7075 | 98.2437 | 99.1757 | 52.7025 | 2685 | 48 | 2647 | 22 | 8 | 36.3636 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.9114 | 94.6773 | 99.2536 | 28.7725 | 4518 | 254 | 4521 | 34 | 34 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.0970 | 98.4127 | 99.7908 | 31.1983 | 1922 | 31 | 1908 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 87.3660 | 78.4928 | 98.5011 | 39.0737 | 927 | 254 | 920 | 14 | 13 | 92.8571 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 90.3872 | 86.4865 | 94.6565 | 71.5217 | 128 | 20 | 124 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.9189 | 75.5734 | 99.5461 | 25.8137 | 659 | 213 | 658 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 91.7858 | 86.9565 | 97.1831 | 21.9780 | 140 | 21 | 138 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6680 | 98.1203 | 99.2218 | 79.3408 | 261 | 5 | 255 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.6858 | 98.0645 | 99.3151 | 81.1856 | 152 | 3 | 145 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.9615 | 94.5946 | 97.3684 | 70.7692 | 35 | 2 | 37 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 78.4024 | 74 | 0 | 73 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 92.6411 | 87.7193 | 98.1481 | 99.2565 | 50 | 7 | 53 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.3077 | 85.7143 | 100.0000 | 99.0500 | 36 | 6 | 38 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 88.8889 | 88.8889 | 88.8889 | 99.4678 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.5547 | 6 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9195 | 98.2099 | 99.6395 | 45.6518 | 3621 | 66 | 3593 | 13 | 7 | 53.8462 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1170 | 98.6103 | 99.6289 | 50.5656 | 1632 | 23 | 1611 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.1564 | 96.8697 | 99.4778 | 38.9804 | 1145 | 37 | 1143 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5867 | 99.2941 | 99.8810 | 43.2816 | 844 | 6 | 839 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.2631 | 94.2205 | 98.3962 | 48.3858 | 1239 | 76 | 1227 | 20 | 11 | 55.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.7707 | 96.6667 | 96.8750 | 65.8120 | 319 | 11 | 310 | 10 | 3 | 30.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.4970 | 92.3077 | 98.9145 | 36.5749 | 732 | 61 | 729 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.4293 | 97.9167 | 98.9474 | 40.2516 | 188 | 4 | 188 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5646 | 99.1329 | 100.0000 | 30.3228 | 1715 | 15 | 1705 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6431 | 99.2888 | 100.0000 | 35.3991 | 698 | 5 | 688 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3103 | 98.6301 | 100.0000 | 25.8312 | 576 | 8 | 580 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7738 | 99.5485 | 100.0000 | 27.1667 | 441 | 2 | 437 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.7273 | 93.6620 | 100.0000 | 38.0282 | 133 | 9 | 132 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 95.6522 | 91.6667 | 100.0000 | 68.6567 | 22 | 2 | 21 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.2567 | 92.7835 | 100.0000 | 23.7288 | 90 | 7 | 90 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 25.0000 | 21 | 0 | 21 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | * | 94.5605 | 94.1748 | 94.9495 | 84.3106 | 97 | 6 | 94 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | het | 94.9137 | 95.0000 | 94.8276 | 83.1884 | 57 | 3 | 55 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 91.8919 | 89.4737 | 94.4444 | 84.4828 | 17 | 2 | 17 | 1 | 1 | 100.0000 | |