PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17251-17300 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9335 | 98.4611 | 99.4104 | 64.3027 | 3839 | 60 | 3878 | 23 | 7 | 30.4348 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.6415 | 98.1210 | 99.1677 | 69.0182 | 1671 | 32 | 1668 | 14 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7133 | 97.7896 | 99.6546 | 56.8394 | 1106 | 25 | 1154 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6234 | 99.7183 | 99.5287 | 62.3224 | 1062 | 3 | 1056 | 5 | 3 | 60.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.5127 | 95.9108 | 97.1223 | 74.2593 | 258 | 11 | 270 | 8 | 3 | 37.5000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 90.0979 | 90.1961 | 90.0000 | 90.0398 | 46 | 5 | 45 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.9485 | 97.2350 | 98.6726 | 55.9454 | 211 | 6 | 223 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.9231 | 1 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0890 | 98.6667 | 99.5150 | 57.5021 | 1036 | 14 | 1026 | 5 | 3 | 60.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.8149 | 98.0851 | 99.5556 | 59.5687 | 461 | 9 | 448 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.2060 | 99.0415 | 99.3711 | 52.8190 | 310 | 3 | 316 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4350 | 99.2509 | 99.6198 | 58.8419 | 265 | 2 | 262 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.7498 | 88.0000 | 95.8333 | 64.1791 | 22 | 3 | 23 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 88.8889 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.0233 | 86.9565 | 100.0000 | 41.6667 | 20 | 3 | 21 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m0_e0 | * | 96.9035 | 95.2118 | 98.6564 | 78.2917 | 517 | 26 | 514 | 7 | 3 | 42.8571 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m0_e0 | het | 95.5404 | 92.0245 | 99.3355 | 73.2206 | 300 | 26 | 299 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 95.2381 | 100.0000 | 90.9091 | 95.5645 | 9 | 0 | 10 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0338 | 100.0000 | 98.0861 | 79.6693 | 208 | 0 | 205 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | * | 97.9147 | 96.4899 | 99.3822 | 78.5098 | 1292 | 47 | 1287 | 8 | 3 | 37.5000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | het | 97.2316 | 94.9807 | 99.5918 | 74.1652 | 738 | 39 | 732 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 92.9362 | 88.6364 | 97.6744 | 92.8808 | 39 | 5 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.3235 | 99.4208 | 99.2263 | 79.9379 | 515 | 3 | 513 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e0 | * | 97.8855 | 96.4912 | 99.3208 | 80.2091 | 1320 | 48 | 1316 | 9 | 3 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e0 | het | 97.1596 | 94.9559 | 99.4681 | 76.3893 | 753 | 40 | 748 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 92.9362 | 88.6364 | 97.6744 | 93.3846 | 39 | 5 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3401 | 99.4350 | 99.2453 | 81.4685 | 528 | 3 | 526 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e1 | * | 97.8909 | 96.5591 | 99.2598 | 80.3577 | 1347 | 48 | 1341 | 10 | 3 | 30.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e1 | het | 97.1585 | 95.0617 | 99.3498 | 76.6474 | 770 | 40 | 764 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 93.0988 | 88.8889 | 97.7273 | 93.3333 | 40 | 5 | 43 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.3504 | 99.4444 | 99.2565 | 81.6068 | 537 | 3 | 534 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m0_e0 | * | 96.0396 | 93.8710 | 98.3108 | 82.6495 | 291 | 19 | 291 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m0_e0 | het | 94.2838 | 90.1042 | 98.8701 | 76.9531 | 173 | 19 | 175 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2222 | 4 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.6667 | 100.0000 | 97.3684 | 84.9604 | 114 | 0 | 111 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m1_e0 | * | 97.6099 | 96.0241 | 99.2491 | 81.0529 | 797 | 33 | 793 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m1_e0 | het | 96.3970 | 93.6214 | 99.3421 | 76.3363 | 455 | 31 | 453 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 17 | 0 | 19 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.2310 | 99.3884 | 99.0741 | 82.8662 | 325 | 2 | 321 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e0 | * | 97.5042 | 95.7993 | 99.2710 | 82.8542 | 821 | 36 | 817 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e0 | het | 96.3718 | 93.5614 | 99.3562 | 78.9331 | 465 | 32 | 463 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 95.5157 | 18 | 1 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.1150 | 99.1202 | 99.1098 | 84.2670 | 338 | 3 | 334 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e1 | * | 97.4288 | 95.8621 | 99.0476 | 82.9442 | 834 | 36 | 832 | 8 | 1 | 12.5000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e1 | het | 96.3546 | 93.7008 | 99.1632 | 79.0901 | 476 | 32 | 474 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 97.2973 | 94.7368 | 100.0000 | 95.5556 | 18 | 1 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.9777 | 99.1254 | 98.8304 | 84.3764 | 340 | 3 | 338 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m0_e0 | * | 95.9251 | 93.7500 | 98.2036 | 86.8297 | 165 | 11 | 164 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m0_e0 | het | 93.5961 | 89.6226 | 97.9381 | 82.0037 | 95 | 11 | 95 | 2 | 0 | 0.0000 | |