PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16701-16750 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.4636 | 95.4363 | 99.5788 | 60.7992 | 1192 | 57 | 1182 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.2339 | 95.3125 | 99.2344 | 58.7664 | 1708 | 84 | 1685 | 13 | 10 | 76.9231 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.5360 | 94.4171 | 98.7522 | 73.2347 | 575 | 34 | 554 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.3359 | 95.5357 | 99.2053 | 39.4061 | 749 | 35 | 749 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.0843 | 96.2406 | 100.0000 | 50.7732 | 384 | 15 | 382 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 87.5391 | 79.3197 | 97.6589 | 50.7414 | 583 | 152 | 584 | 14 | 14 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.8712 | 78.6982 | 94.4828 | 72.7955 | 133 | 36 | 137 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 87.2734 | 78.1321 | 98.8372 | 30.2231 | 343 | 96 | 340 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.6780 | 84.2520 | 98.1651 | 42.0213 | 107 | 20 | 107 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4220 | 98.8506 | 100.0000 | 71.4777 | 86 | 1 | 83 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0291 | 98.0769 | 100.0000 | 73.0769 | 51 | 1 | 49 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.7059 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 70.6667 | 23 | 0 | 22 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 84.0042 | 73.5294 | 97.9592 | 95.6328 | 50 | 18 | 48 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 82.6667 | 70.4545 | 100.0000 | 95.9420 | 31 | 13 | 28 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 75.6757 | 66.6667 | 87.5000 | 94.5946 | 6 | 3 | 7 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 92.8571 | 86.6667 | 100.0000 | 95.4225 | 13 | 2 | 13 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.6113 | 96.0375 | 99.2375 | 61.0025 | 921 | 38 | 911 | 7 | 5 | 71.4286 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.7138 | 96.0100 | 99.4792 | 68.9069 | 385 | 16 | 382 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 96.8866 | 95.1220 | 98.7179 | 46.1140 | 312 | 16 | 308 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4586 | 97.3913 | 99.5495 | 58.8889 | 224 | 6 | 221 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.3412 | 90.9091 | 98.0427 | 61.3214 | 560 | 56 | 551 | 11 | 10 | 90.9091 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.2859 | 92.6829 | 98.0392 | 77.6316 | 152 | 12 | 150 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 93.7178 | 89.7143 | 98.0952 | 43.4470 | 314 | 36 | 309 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 94.9286 | 92.1569 | 97.8723 | 55.6604 | 94 | 8 | 92 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0354 | 98.0892 | 100.0000 | 53.7037 | 154 | 3 | 150 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 66.4671 | 60 | 1 | 56 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.0099 | 98.0392 | 100.0000 | 32.8947 | 50 | 1 | 51 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.8764 | 97.7778 | 100.0000 | 46.9136 | 44 | 1 | 43 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.3820 | 91.3043 | 97.6744 | 49.4118 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 87.5000 | 87.5000 | 87.5000 | 78.3784 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 26.6667 | 22 | 3 | 22 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 27.7778 | 13 | 0 | 13 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 86.1940 | 78.5714 | 95.4545 | 89.0000 | 22 | 6 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m0_e0 | het | 82.1670 | 73.6842 | 92.8571 | 88.7097 | 14 | 5 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 86.9565 | 3 | 1 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.5660 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.6660 | 81.6092 | 97.0588 | 84.4037 | 71 | 16 | 66 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 88.1963 | 82.6087 | 94.5946 | 86.1423 | 38 | 8 | 35 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 89.3617 | 80.7692 | 100.0000 | 72.7273 | 21 | 5 | 18 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 87.3786 | 12 | 3 | 13 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 87.0528 | 78.8889 | 97.1014 | 85.5649 | 71 | 19 | 67 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 86.2547 | 79.1667 | 94.7368 | 87.3754 | 38 | 10 | 36 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 89.3617 | 80.7692 | 100.0000 | 72.7273 | 21 | 5 | 18 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 88.2883 | 12 | 4 | 13 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 86.8020 | 78.3505 | 97.2973 | 84.9899 | 76 | 21 | 72 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 87.1390 | 80.3922 | 95.1220 | 86.7742 | 41 | 10 | 39 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 86.7925 | 76.6667 | 100.0000 | 71.4286 | 23 | 7 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 85.7143 | 75.0000 | 100.0000 | 88.4956 | 12 | 4 | 13 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 86.9565 | 83.3333 | 90.9091 | 90.4348 | 10 | 2 | 10 | 1 | 0 | 0.0000 | |