PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16251-16300 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.5600 | 99.5848 | 99.5352 | 55.2358 | 55400 | 231 | 55463 | 259 | 19 | 7.3359 | |
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4242 | 99.5483 | 99.3004 | 56.7770 | 35259 | 160 | 35343 | 249 | 16 | 6.4257 | |
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 77.1930 | 12 | 1 | 13 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8016 | 99.6534 | 99.9503 | 52.1900 | 20129 | 70 | 20107 | 10 | 3 | 30.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.4371 | 99.0591 | 97.8229 | 71.0281 | 45272 | 430 | 45697 | 1017 | 32 | 3.1465 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.7774 | 98.9308 | 96.6505 | 72.2034 | 28405 | 307 | 28740 | 996 | 22 | 2.2088 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.6792 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5807 | 99.2754 | 99.8880 | 68.6524 | 16852 | 123 | 16941 | 19 | 8 | 42.1053 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.3672 | 99.4179 | 97.3384 | 59.4908 | 4270 | 25 | 4352 | 119 | 1 | 0.8403 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5366 | 99.3299 | 95.8069 | 62.8145 | 2668 | 18 | 2719 | 119 | 1 | 0.8403 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7820 | 99.5649 | 100.0000 | 51.8715 | 1602 | 7 | 1633 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2661 | 99.8221 | 98.7161 | 56.1302 | 6173 | 11 | 6305 | 82 | 1 | 1.2195 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.8848 | 99.7965 | 97.9897 | 57.5988 | 3923 | 8 | 3997 | 82 | 1 | 1.2195 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9333 | 99.8668 | 100.0000 | 53.2144 | 2249 | 3 | 2307 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5440 | 99.8969 | 99.1935 | 59.0506 | 3874 | 4 | 3936 | 32 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.3114 | 99.8797 | 98.7495 | 59.4453 | 2491 | 3 | 2527 | 32 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.9638 | 99.9277 | 100.0000 | 58.3062 | 1382 | 1 | 1408 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.5263 | 90.1554 | 97.1591 | 89.2157 | 348 | 38 | 342 | 10 | 1 | 10.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.2553 | 90.5797 | 96.0938 | 89.2437 | 250 | 26 | 246 | 10 | 1 | 10.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 94.2308 | 89.0909 | 100.0000 | 89.1403 | 98 | 12 | 96 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.5027 | 97.6813 | 99.3380 | 83.9369 | 2654 | 63 | 2551 | 17 | 1 | 5.8824 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.5285 | 98.0726 | 98.9887 | 85.3252 | 1730 | 34 | 1664 | 17 | 1 | 5.8824 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.0000 | 2 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.4517 | 96.9506 | 100.0000 | 80.4511 | 922 | 29 | 884 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.1434 | 98.6909 | 99.6000 | 82.9235 | 2337 | 31 | 2241 | 9 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2598 | 99.1413 | 99.3785 | 84.5990 | 1501 | 13 | 1439 | 9 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.0000 | 2 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.9324 | 97.8873 | 100.0000 | 78.7726 | 834 | 18 | 799 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e0 | het | 96.2963 | 92.8571 | 100.0000 | 92.6316 | 13 | 1 | 14 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9231 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.3396 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e1 | * | 97.6744 | 95.4545 | 100.0000 | 94.0860 | 21 | 1 | 22 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e1 | het | 96.2963 | 92.8571 | 100.0000 | 92.8571 | 13 | 1 | 14 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.5455 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_siren | * | 97.5076 | 96.4637 | 98.5743 | 79.6096 | 491 | 18 | 484 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_siren | het | 97.8430 | 97.5000 | 98.1884 | 80.0145 | 273 | 7 | 271 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_siren | hetalt | 96.3564 | 93.9394 | 98.9011 | 80.3456 | 93 | 6 | 90 | 1 | 1 | 100.0000 | |