PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16201-16250 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.8776 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e1 | * | 85.7143 | 75.0000 | 100.0000 | 95.9732 | 6 | 2 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 94.5455 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | * | 95.4449 | 93.1148 | 97.8947 | 78.4743 | 284 | 21 | 279 | 6 | 4 | 66.6667 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | het | 95.3087 | 93.0070 | 97.7273 | 76.9231 | 133 | 10 | 129 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | hetalt | 94.1176 | 88.8889 | 100.0000 | 80.5970 | 64 | 8 | 65 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | homalt | 96.6288 | 96.6667 | 96.5909 | 78.8969 | 87 | 3 | 85 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | segdup | * | 98.2573 | 97.1429 | 99.3976 | 90.0360 | 170 | 5 | 165 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | segdup | het | 98.1509 | 97.5904 | 98.7179 | 89.4595 | 81 | 2 | 77 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 91.0788 | 44 | 1 | 43 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | segdup | homalt | 97.8261 | 95.7447 | 100.0000 | 89.8649 | 45 | 2 | 45 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 58.8235 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 62.5000 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | * | * | 99.8754 | 99.8921 | 99.8587 | 17.5113 | 3051330 | 3296 | 3051518 | 4317 | 267 | 6.1849 | |
| ltrigg-rtg1 | SNP | * | * | het | 99.8185 | 99.8570 | 99.7799 | 17.5567 | 1870919 | 2679 | 1871167 | 4127 | 102 | 2.4715 | |
| ltrigg-rtg1 | SNP | * | * | hetalt | 99.2007 | 99.6556 | 98.7500 | 40.5405 | 868 | 3 | 869 | 11 | 11 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | * | homalt | 99.9664 | 99.9480 | 99.9848 | 17.4153 | 1179543 | 614 | 1179482 | 179 | 154 | 86.0335 | |
| ltrigg-rtg1 | SNP | * | HG002complexvar | * | 99.8490 | 99.7395 | 99.9587 | 18.9301 | 752419 | 1965 | 752595 | 311 | 136 | 43.7299 | |
| ltrigg-rtg1 | SNP | * | HG002complexvar | het | 99.8148 | 99.6788 | 99.9511 | 18.4181 | 464005 | 1495 | 464235 | 227 | 59 | 25.9912 | |
| ltrigg-rtg1 | SNP | * | HG002complexvar | hetalt | 98.8749 | 99.0323 | 98.7179 | 36.8421 | 307 | 3 | 308 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | HG002complexvar | homalt | 99.9052 | 99.8382 | 99.9722 | 19.7176 | 288107 | 467 | 288052 | 80 | 73 | 91.2500 | |
| ltrigg-rtg1 | SNP | * | HG002compoundhet | * | 98.7318 | 97.7074 | 99.7779 | 38.3623 | 25230 | 592 | 25160 | 56 | 17 | 30.3571 | |
| ltrigg-rtg1 | SNP | * | HG002compoundhet | het | 98.6093 | 97.5384 | 99.7040 | 42.5144 | 13829 | 349 | 13809 | 41 | 9 | 21.9512 | |
| ltrigg-rtg1 | SNP | * | HG002compoundhet | hetalt | 99.8257 | 99.6520 | 100.0000 | 21.3175 | 859 | 3 | 860 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | HG002compoundhet | homalt | 98.8047 | 97.7741 | 99.8572 | 33.1849 | 10542 | 240 | 10491 | 15 | 8 | 53.3333 | |
| ltrigg-rtg1 | SNP | * | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | * | func_cds | * | 99.6647 | 99.8898 | 99.4405 | 22.8252 | 18130 | 20 | 18129 | 102 | 1 | 0.9804 | |
| ltrigg-rtg1 | SNP | * | func_cds | het | 99.4644 | 99.8387 | 99.0928 | 23.2229 | 11143 | 18 | 11142 | 102 | 1 | 0.9804 | |
| ltrigg-rtg1 | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.3333 | 10 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | func_cds | homalt | 99.9857 | 99.9713 | 100.0000 | 22.0795 | 6977 | 2 | 6977 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.7782 | 98.2578 | 97.3034 | 68.5775 | 4681 | 83 | 4763 | 132 | 5 | 3.7879 | |
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.0035 | 98.2095 | 95.8267 | 71.5438 | 2962 | 54 | 3008 | 131 | 4 | 3.0534 | |
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 92.3077 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.1355 | 98.3410 | 99.9430 | 61.2925 | 1719 | 29 | 1754 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||