PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15951-16000 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.9739 | 92.7447 | 99.4362 | 52.4133 | 15493 | 1212 | 15872 | 90 | 88 | 97.7778 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.8202 | 97.9852 | 99.6695 | 59.8782 | 17800 | 366 | 17792 | 59 | 52 | 88.1356 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.9756 | 96.4774 | 99.5211 | 49.0897 | 35303 | 1289 | 35537 | 171 | 109 | 63.7427 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.8607 | 96.3706 | 99.3977 | 55.2797 | 15188 | 572 | 15184 | 92 | 32 | 34.7826 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.8607 | 94.4535 | 99.3939 | 46.6406 | 9894 | 581 | 10167 | 62 | 61 | 98.3871 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2568 | 98.6869 | 99.8334 | 39.3004 | 10221 | 136 | 10186 | 17 | 16 | 94.1176 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.8472 | 76.6302 | 97.5845 | 55.5436 | 1610 | 491 | 1616 | 40 | 37 | 92.5000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.9657 | 75.7143 | 94.2356 | 75.6856 | 371 | 119 | 376 | 23 | 20 | 86.9565 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.9703 | 74.2812 | 99.2529 | 37.7409 | 930 | 322 | 930 | 7 | 7 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 91.1548 | 86.0724 | 96.8750 | 44.7323 | 309 | 50 | 310 | 10 | 10 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.5721 | 99.2498 | 99.8965 | 56.0085 | 28048 | 212 | 27998 | 29 | 16 | 55.1724 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.4987 | 99.1235 | 99.8768 | 54.4784 | 16285 | 144 | 16208 | 20 | 7 | 35.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.1229 | 95.5140 | 98.7868 | 83.6312 | 511 | 24 | 570 | 7 | 7 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7960 | 99.6105 | 99.9822 | 54.2557 | 11252 | 44 | 11220 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 88.4082 | 79.8387 | 99.0385 | 99.9179 | 99 | 25 | 103 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 87.7419 | 78.1609 | 100.0000 | 99.8911 | 68 | 19 | 68 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 83.3333 | 75.0000 | 93.7500 | 99.9211 | 12 | 4 | 15 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 95.0000 | 90.4762 | 100.0000 | 99.9546 | 19 | 2 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8166 | 98.1371 | 99.5056 | 55.0392 | 19492 | 370 | 19523 | 97 | 32 | 32.9897 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.7118 | 98.0915 | 99.3400 | 56.1553 | 10896 | 212 | 10837 | 72 | 12 | 16.6667 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.6327 | 95.7867 | 99.5512 | 56.7594 | 2569 | 113 | 2662 | 12 | 12 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5211 | 99.2589 | 99.7847 | 51.9691 | 6027 | 45 | 6024 | 13 | 8 | 61.5385 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.6549 | 93.5593 | 97.8465 | 65.3460 | 2484 | 171 | 2499 | 55 | 26 | 47.2727 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.7289 | 93.1818 | 96.3283 | 76.7629 | 902 | 66 | 892 | 34 | 8 | 23.5294 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.4707 | 92.3849 | 98.7698 | 48.9915 | 1104 | 91 | 1124 | 14 | 13 | 92.8571 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.8578 | 97.1545 | 98.5714 | 57.5022 | 478 | 14 | 483 | 7 | 5 | 71.4286 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2985 | 98.8415 | 99.7597 | 44.6403 | 6655 | 78 | 6641 | 16 | 6 | 37.5000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1048 | 98.5238 | 99.6927 | 45.3838 | 3604 | 54 | 3568 | 11 | 2 | 18.1818 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.9130 | 98.1582 | 99.6795 | 48.5714 | 906 | 17 | 933 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7905 | 99.6747 | 99.9066 | 41.3311 | 2145 | 7 | 2140 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.1114 | 91.8919 | 98.5646 | 61.0075 | 204 | 18 | 206 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.7840 | 88.0000 | 93.7500 | 82.8571 | 44 | 6 | 45 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.9580 | 90.4000 | 100.0000 | 36.3128 | 113 | 12 | 114 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.9610 | 47 | 0 | 47 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l100_m0_e0 | * | 96.4953 | 94.2418 | 98.8591 | 79.2883 | 1473 | 90 | 1473 | 17 | 4 | 23.5294 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m0_e0 | het | 95.3831 | 92.0666 | 98.9474 | 74.9605 | 940 | 81 | 940 | 10 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m0_e0 | hetalt | 90.4198 | 84.8485 | 96.7742 | 93.9216 | 28 | 5 | 30 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m0_e0 | homalt | 99.0173 | 99.2141 | 98.8212 | 82.1404 | 505 | 4 | 503 | 6 | 3 | 50.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m1_e0 | * | 97.3566 | 95.5103 | 99.2756 | 78.9689 | 3425 | 161 | 3426 | 25 | 7 | 28.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m1_e0 | het | 96.7206 | 94.3624 | 99.1996 | 75.5384 | 2109 | 126 | 2107 | 17 | 2 | 11.7647 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m1_e0 | hetalt | 91.3043 | 84.6774 | 99.0566 | 91.1148 | 105 | 19 | 105 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m1_e0 | homalt | 99.0600 | 98.6960 | 99.4267 | 80.9576 | 1211 | 16 | 1214 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e0 | * | 97.3361 | 95.4779 | 99.2680 | 80.2721 | 3526 | 167 | 3526 | 26 | 7 | 26.9231 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e0 | het | 96.7120 | 94.3650 | 99.1788 | 77.1166 | 2177 | 130 | 2174 | 18 | 2 | 11.1111 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e0 | hetalt | 91.3793 | 84.8000 | 99.0654 | 91.6341 | 106 | 19 | 106 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e0 | homalt | 99.0050 | 98.5726 | 99.4413 | 82.1306 | 1243 | 18 | 1246 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e1 | * | 97.3272 | 95.5005 | 99.2250 | 80.3823 | 3587 | 169 | 3585 | 28 | 7 | 25.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e1 | het | 96.7209 | 94.4516 | 99.1019 | 77.2848 | 2213 | 130 | 2207 | 20 | 2 | 10.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e1 | hetalt | 90.9869 | 84.0909 | 99.1150 | 91.3476 | 111 | 21 | 112 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e1 | homalt | 99.0206 | 98.5948 | 99.4501 | 82.2479 | 1263 | 18 | 1266 | 7 | 4 | 57.1429 | |