PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14751-14800 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l250_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l250_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l250_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 98.4375 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 97.0588 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 100.0000 | 98.4375 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | segdup | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 94.4444 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | tech_badpromoters | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | INDEL | C16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | INDEL | C16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C1_5 | * | * | 91.7281 | 90.0000 | 93.5238 | 96.2656 | 9 | 1 | 982 | 68 | 6 | 8.8235 | |
| ltrigg-rtg2 | INDEL | C1_5 | * | het | 88.0848 | 88.8889 | 87.2951 | 96.3468 | 8 | 1 | 426 | 62 | 2 | 3.2258 | |
| ltrigg-rtg2 | INDEL | C1_5 | * | hetalt | 99.4614 | 100.0000 | 98.9286 | 95.9296 | 1 | 0 | 277 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 98.9362 | 96.4213 | 0 | 0 | 279 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | C1_5 | HG002complexvar | * | 91.9145 | 85.7143 | 99.0816 | 88.0866 | 6 | 1 | 971 | 9 | 3 | 33.3333 | |
| ltrigg-rtg2 | INDEL | * | * | * | 99.2539 | 98.8759 | 99.6347 | 56.1284 | 340668 | 3873 | 340411 | 1248 | 516 | 41.3462 | |
| ltrigg-rtg2 | INDEL | * | * | het | 99.3348 | 99.1568 | 99.5135 | 56.1055 | 192496 | 1637 | 191657 | 937 | 230 | 24.5464 | |
| ltrigg-rtg2 | INDEL | * | * | hetalt | 97.1063 | 94.8330 | 99.4912 | 68.4092 | 23933 | 1304 | 24639 | 126 | 124 | 98.4127 | |
| ltrigg-rtg2 | INDEL | * | * | homalt | 99.5524 | 99.2554 | 99.8512 | 52.3128 | 124239 | 932 | 124115 | 185 | 162 | 87.5676 | |
| ltrigg-rtg2 | INDEL | * | HG002complexvar | * | 98.9919 | 98.4780 | 99.5112 | 54.8986 | 75766 | 1171 | 75523 | 371 | 227 | 61.1860 | |
| ltrigg-rtg2 | INDEL | * | HG002complexvar | het | 99.0269 | 98.6108 | 99.4465 | 53.1360 | 45570 | 642 | 44739 | 249 | 116 | 46.5863 | |
| ltrigg-rtg2 | INDEL | * | HG002complexvar | hetalt | 95.5730 | 93.2685 | 97.9943 | 75.0000 | 3450 | 249 | 4153 | 85 | 84 | 98.8235 | |
| ltrigg-rtg2 | INDEL | * | HG002complexvar | homalt | 99.4106 | 98.9640 | 99.8613 | 51.7784 | 26746 | 280 | 26631 | 37 | 27 | 72.9730 | |
| ltrigg-rtg2 | INDEL | * | HG002compoundhet | * | 96.7706 | 94.9266 | 98.6878 | 59.5666 | 28440 | 1520 | 28503 | 379 | 309 | 81.5303 | |
| ltrigg-rtg2 | INDEL | * | HG002compoundhet | het | 95.9824 | 95.5300 | 96.4390 | 67.6682 | 3911 | 183 | 3954 | 146 | 79 | 54.1096 | |
| ltrigg-rtg2 | INDEL | * | HG002compoundhet | hetalt | 97.1901 | 94.8491 | 99.6495 | 57.3566 | 23883 | 1297 | 23882 | 84 | 83 | 98.8095 | |
| ltrigg-rtg2 | INDEL | * | HG002compoundhet | homalt | 87.5156 | 94.1691 | 81.7402 | 67.9371 | 646 | 40 | 667 | 149 | 147 | 98.6577 | |
| ltrigg-rtg2 | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.8898 | 10 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.8803 | 6 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8503 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9119 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | func_cds | * | 99.3248 | 99.1011 | 99.5495 | 36.5714 | 441 | 4 | 442 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | func_cds | het | 99.0654 | 99.0654 | 99.0654 | 38.1503 | 212 | 2 | 212 | 2 | 0 | 0.0000 | |