PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14051-14100 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m2_e0 | * | 91.3043 | 84.0000 | 100.0000 | 92.5267 | 21 | 4 | 21 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m2_e0 | het | 84.6154 | 73.3333 | 100.0000 | 91.8519 | 11 | 4 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1039 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 89.8551 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m2_e1 | * | 92.0000 | 85.1852 | 100.0000 | 92.0962 | 23 | 4 | 23 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m2_e1 | het | 85.7143 | 75.0000 | 100.0000 | 91.3669 | 12 | 4 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2025 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 89.0411 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 95.9016 | 5 | 2 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 96.5517 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 88.4615 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m2_e0 | * | 85.7143 | 75.0000 | 100.0000 | 95.6522 | 6 | 2 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 95.4545 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m2_e1 | * | 85.7143 | 75.0000 | 100.0000 | 95.8621 | 6 | 2 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 95.5882 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.6250 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_siren | * | 96.2876 | 93.7705 | 98.9437 | 78.2708 | 286 | 19 | 281 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_siren | het | 96.3922 | 93.7063 | 99.2366 | 78.1667 | 134 | 9 | 130 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_siren | hetalt | 94.8905 | 90.2778 | 100.0000 | 81.4085 | 65 | 7 | 66 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_siren | homalt | 97.1812 | 96.6667 | 97.7011 | 75.2841 | 87 | 3 | 85 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | segdup | * | 98.5505 | 97.7143 | 99.4012 | 90.2624 | 171 | 4 | 166 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | segdup | het | 98.1509 | 97.5904 | 98.7179 | 90.0383 | 81 | 2 | 77 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.5058 | 45 | 0 | 44 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | segdup | homalt | 97.8261 | 95.7447 | 100.0000 | 89.1304 | 45 | 2 | 45 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 58.8235 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 62.5000 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | * | * | 99.8749 | 99.8935 | 99.8562 | 17.0058 | 3051374 | 3252 | 3051531 | 4395 | 283 | 6.4391 | |
| ltrigg-rtg2 | SNP | * | * | het | 99.8157 | 99.8572 | 99.7742 | 16.9842 | 1870922 | 2676 | 1871158 | 4235 | 135 | 3.1877 | |
| ltrigg-rtg2 | SNP | * | * | hetalt | 99.2565 | 99.5408 | 98.9738 | 40.5020 | 867 | 4 | 868 | 9 | 9 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | * | homalt | 99.9694 | 99.9515 | 99.9872 | 17.0159 | 1179585 | 572 | 1179505 | 151 | 139 | 92.0530 | |
| ltrigg-rtg2 | SNP | * | HG002complexvar | * | 99.8684 | 99.7896 | 99.9473 | 18.8678 | 752797 | 1587 | 752943 | 397 | 167 | 42.0655 | |
| ltrigg-rtg2 | SNP | * | HG002complexvar | het | 99.8358 | 99.7414 | 99.9305 | 18.3888 | 464296 | 1204 | 464515 | 323 | 94 | 29.1022 | |
| ltrigg-rtg2 | SNP | * | HG002complexvar | hetalt | 99.0410 | 99.6774 | 98.4127 | 37.6238 | 309 | 1 | 310 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | HG002complexvar | homalt | 99.9218 | 99.8676 | 99.9761 | 19.6026 | 288192 | 382 | 288118 | 69 | 68 | 98.5507 | |
| ltrigg-rtg2 | SNP | * | HG002compoundhet | * | 99.3639 | 98.9737 | 99.7572 | 37.9767 | 25557 | 265 | 25473 | 62 | 19 | 30.6452 | |
| ltrigg-rtg2 | SNP | * | HG002compoundhet | het | 99.2921 | 98.9773 | 99.6090 | 42.0270 | 14033 | 145 | 14011 | 55 | 13 | 23.6364 | |