PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14001-14050 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.6562 | 96.0265 | 99.3421 | 59.0296 | 145 | 6 | 151 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2797 | 99.2823 | 99.2771 | 46.2435 | 415 | 3 | 412 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3223 | 99.1803 | 97.4790 | 53.1496 | 121 | 1 | 116 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5763 | 99.1561 | 100.0000 | 39.9497 | 235 | 2 | 239 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 52.5000 | 59 | 0 | 57 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 70.2703 | 11 | 2 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.9091 | 83.3333 | 100.0000 | 56.5217 | 10 | 2 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m0_e0 | * | 90.0000 | 81.8182 | 100.0000 | 86.5672 | 27 | 6 | 27 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m0_e0 | het | 86.6667 | 76.4706 | 100.0000 | 85.7143 | 13 | 4 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 94.5455 | 3 | 1 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 80.0000 | 11 | 1 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m1_e0 | * | 95.8904 | 92.1053 | 100.0000 | 80.2734 | 105 | 9 | 101 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m1_e0 | het | 95.5752 | 91.5254 | 100.0000 | 78.2427 | 54 | 5 | 52 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 86.0294 | 20 | 2 | 19 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 78.1022 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e0 | * | 95.9641 | 92.2414 | 100.0000 | 81.9298 | 107 | 9 | 103 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e0 | het | 95.7265 | 91.8033 | 100.0000 | 79.6992 | 56 | 5 | 54 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 87.3333 | 20 | 2 | 19 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 80.5195 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e1 | * | 95.9641 | 92.2414 | 100.0000 | 82.3328 | 107 | 9 | 103 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e1 | het | 95.7265 | 91.8033 | 100.0000 | 80.1471 | 56 | 5 | 54 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 87.6623 | 20 | 2 | 19 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.8750 | 93.9394 | 100.0000 | 80.8917 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m0_e0 | * | 84.6154 | 73.3333 | 100.0000 | 91.9708 | 11 | 4 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m0_e0 | het | 71.4286 | 55.5556 | 100.0000 | 92.0635 | 5 | 4 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.8571 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m1_e0 | * | 95.0495 | 90.5660 | 100.0000 | 85.6250 | 48 | 5 | 46 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m1_e0 | het | 90.9091 | 83.3333 | 100.0000 | 85.0932 | 25 | 5 | 24 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.2500 | 8 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.0127 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m2_e0 | * | 95.0495 | 90.5660 | 100.0000 | 87.7660 | 48 | 5 | 46 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m2_e0 | het | 90.9091 | 83.3333 | 100.0000 | 87.0968 | 25 | 5 | 24 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.6316 | 8 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 84.2105 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m2_e1 | * | 95.0495 | 90.5660 | 100.0000 | 88.0519 | 48 | 5 | 46 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m2_e1 | het | 90.9091 | 83.3333 | 100.0000 | 87.3016 | 25 | 5 | 24 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7835 | 8 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 84.8485 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m0_e0 | * | 85.7143 | 75.0000 | 100.0000 | 94.1748 | 6 | 2 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m0_e0 | het | 66.6667 | 50.0000 | 100.0000 | 95.7447 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m1_e0 | * | 91.3043 | 84.0000 | 100.0000 | 91.3223 | 21 | 4 | 21 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m1_e0 | het | 84.6154 | 73.3333 | 100.0000 | 90.9836 | 11 | 4 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.4545 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 87.0370 | 7 | 0 | 7 | 0 | 0 | ||