PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
13701-13750 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 92.8571 | 100.0000 | 86.6667 | 86.3636 | 12 | 0 | 13 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5046 | 99.0824 | 99.9304 | 64.6956 | 11446 | 106 | 11491 | 8 | 6 | 75.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.2450 | 99.0076 | 99.4836 | 62.5686 | 4789 | 48 | 4816 | 25 | 3 | 12.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.1764 | 99.1423 | 99.2106 | 64.9939 | 3121 | 27 | 3142 | 25 | 3 | 12.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3741 | 98.7559 | 100.0000 | 56.8481 | 1667 | 21 | 1673 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 67.5768 | 56.2500 | 84.6154 | 95.9248 | 9 | 7 | 11 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.0000 | 50.0000 | 75.0000 | 96.8627 | 5 | 5 | 6 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 100.0000 | 0.0000 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.0000 | 66.6667 | 100.0000 | 93.6508 | 4 | 2 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8244 | 99.7128 | 99.9361 | 40.9541 | 6250 | 18 | 6259 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7907 | 99.6802 | 99.9015 | 41.5683 | 4052 | 13 | 4057 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8863 | 99.7728 | 100.0000 | 39.6930 | 2196 | 5 | 2200 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2583 | 99.5434 | 98.9748 | 37.3981 | 10683 | 49 | 10716 | 111 | 5 | 4.5045 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9728 | 99.5552 | 98.3972 | 40.4460 | 6714 | 30 | 6753 | 110 | 5 | 4.5455 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7486 | 99.5235 | 99.9748 | 31.2218 | 3968 | 19 | 3962 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 80.7395 | 74.2574 | 88.4615 | 92.0408 | 75 | 26 | 69 | 9 | 3 | 33.3333 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 80.0241 | 77.2727 | 82.9787 | 93.9040 | 51 | 15 | 39 | 8 | 2 | 25.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 80.2676 | 68.5714 | 96.7742 | 85.1675 | 24 | 11 | 30 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7441 | 99.6928 | 99.7955 | 25.9231 | 3894 | 12 | 3904 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6572 | 99.5964 | 99.7181 | 27.1206 | 2468 | 10 | 2476 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9300 | 99.9299 | 99.9300 | 23.7460 | 1426 | 1 | 1428 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 93.2584 | 7 | 1 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 93.6709 | 6 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 90.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l100_m0_e0 | * | 98.7646 | 97.6758 | 99.8779 | 53.5389 | 21265 | 506 | 21269 | 26 | 7 | 26.9231 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m0_e0 | het | 98.2231 | 96.6531 | 99.8449 | 50.2864 | 13515 | 468 | 13519 | 21 | 2 | 9.5238 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 61.2903 | 12 | 2 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l100_m0_e0 | homalt | 99.7358 | 99.5369 | 99.9354 | 58.2970 | 7738 | 36 | 7738 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m1_e0 | * | 99.2402 | 98.6481 | 99.8395 | 53.2325 | 47283 | 648 | 47285 | 76 | 17 | 22.3684 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m1_e0 | het | 98.9017 | 98.0395 | 99.7791 | 50.4672 | 29355 | 587 | 29358 | 65 | 6 | 9.2308 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m1_e0 | hetalt | 96.4286 | 93.1034 | 100.0000 | 61.9718 | 27 | 2 | 27 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l100_m1_e0 | homalt | 99.8049 | 99.6715 | 99.9386 | 57.1476 | 17901 | 59 | 17900 | 11 | 11 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e0 | * | 99.2429 | 98.6642 | 99.8285 | 55.8705 | 48307 | 654 | 48309 | 83 | 19 | 22.8916 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e0 | het | 98.9081 | 98.0635 | 99.7675 | 53.0390 | 30029 | 593 | 30032 | 70 | 6 | 8.5714 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 64.5570 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e0 | homalt | 99.8031 | 99.6778 | 99.9288 | 59.8461 | 18250 | 59 | 18249 | 13 | 13 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e1 | * | 99.2480 | 98.6784 | 99.8242 | 55.9018 | 48831 | 654 | 48833 | 86 | 19 | 22.0930 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e1 | het | 98.9153 | 98.0846 | 99.7602 | 53.1134 | 30367 | 593 | 30370 | 73 | 6 | 8.2192 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e1 | hetalt | 96.6667 | 93.5484 | 100.0000 | 63.7500 | 29 | 2 | 29 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e1 | homalt | 99.8051 | 99.6810 | 99.9295 | 59.8306 | 18435 | 59 | 18434 | 13 | 13 | 100.0000 | |