PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
13551-13600 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9917 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9858 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 33.3333 | 18 | 1 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 38.4615 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 27.2727 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | * | * | 98.6807 | 97.9036 | 99.4704 | 46.9068 | 25545 | 547 | 25354 | 135 | 83 | 61.4815 | |
| ltrigg-rtg2 | INDEL | D6_15 | * | het | 99.2141 | 99.0942 | 99.3342 | 52.7094 | 11487 | 105 | 11339 | 76 | 26 | 34.2105 | |
| ltrigg-rtg2 | INDEL | D6_15 | * | hetalt | 97.5461 | 95.7915 | 99.3661 | 40.2288 | 7830 | 344 | 7838 | 50 | 50 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | * | homalt | 99.1477 | 98.4508 | 99.8545 | 42.0407 | 6228 | 98 | 6177 | 9 | 7 | 77.7778 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002complexvar | * | 97.7900 | 96.9257 | 98.6698 | 51.5393 | 5139 | 163 | 4970 | 67 | 50 | 74.6269 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002complexvar | het | 98.5457 | 97.9487 | 99.1499 | 50.4465 | 3056 | 64 | 2916 | 25 | 8 | 32.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002complexvar | hetalt | 94.0012 | 92.3001 | 95.7661 | 55.0113 | 935 | 78 | 950 | 42 | 42 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002complexvar | homalt | 99.0937 | 98.2036 | 100.0000 | 51.0204 | 1148 | 21 | 1104 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | HG002compoundhet | * | 97.5434 | 95.9362 | 99.2054 | 30.5780 | 8664 | 367 | 8615 | 69 | 63 | 91.3043 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002compoundhet | het | 97.1219 | 96.8458 | 97.3995 | 54.6381 | 829 | 27 | 824 | 22 | 16 | 72.7273 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002compoundhet | hetalt | 97.6303 | 95.8410 | 99.4878 | 26.1770 | 7812 | 339 | 7769 | 40 | 40 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002compoundhet | homalt | 84.6862 | 95.8333 | 75.8621 | 56.0606 | 23 | 1 | 22 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.8573 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0385 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 48.1481 | 42 | 1 | 42 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 44.0000 | 28 | 1 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 52.0000 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.4464 | 92.3899 | 98.7120 | 46.6442 | 3630 | 299 | 3602 | 47 | 34 | 72.3404 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.6005 | 95.5255 | 97.6999 | 63.9558 | 918 | 43 | 892 | 21 | 10 | 47.6190 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.9326 | 91.0397 | 99.1732 | 34.1898 | 2154 | 212 | 2159 | 18 | 18 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5396 | 92.6910 | 98.5689 | 43.9880 | 558 | 44 | 551 | 8 | 6 | 75.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 96.2500 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 96.9072 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.7873 | 98.1180 | 99.4657 | 52.4428 | 15745 | 302 | 15637 | 84 | 58 | 69.0476 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1175 | 98.9995 | 99.2358 | 63.1487 | 5541 | 56 | 5454 | 42 | 17 | 40.4762 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.3080 | 97.2255 | 99.4149 | 40.8780 | 6623 | 189 | 6627 | 39 | 39 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.1689 | 98.4332 | 99.9157 | 48.1800 | 3581 | 57 | 3556 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.1456 | 97.0290 | 99.2882 | 49.3199 | 17146 | 525 | 17018 | 122 | 80 | 65.5738 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.6532 | 98.4263 | 98.8811 | 62.2592 | 5754 | 92 | 5656 | 64 | 24 | 37.5000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.5228 | 95.7439 | 99.3691 | 35.4149 | 7716 | 343 | 7718 | 49 | 49 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6703 | 97.6102 | 99.7536 | 44.9684 | 3676 | 90 | 3644 | 9 | 7 | 77.7778 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.0861 | 98.0861 | 98.0861 | 68.2853 | 205 | 4 | 205 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.0423 | 99.2126 | 96.8992 | 68.9904 | 126 | 1 | 125 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 63.4615 | 36 | 3 | 38 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 69.7842 | 43 | 0 | 42 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 2 | 0 | 2 | 0 | 0 | ||