PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
13451-13500 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | hetalt | 98.1818 | 96.4286 | 100.0000 | 92.1300 | 108 | 4 | 109 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | homalt | 99.5854 | 99.3399 | 99.8321 | 73.3974 | 1204 | 8 | 1189 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | segdup | * | 99.1958 | 99.4334 | 98.9593 | 93.1346 | 1053 | 6 | 1046 | 11 | 3 | 27.2727 | |
| ltrigg-rtg2 | INDEL | I1_5 | segdup | het | 98.6887 | 98.8848 | 98.4934 | 93.5006 | 532 | 6 | 523 | 8 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8447 | 48 | 0 | 52 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | segdup | homalt | 99.6825 | 100.0000 | 99.3671 | 91.5023 | 473 | 0 | 471 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I1_5 | tech_badpromoters | * | 97.7778 | 100.0000 | 95.6522 | 52.0833 | 22 | 0 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | tech_badpromoters | het | 94.1176 | 100.0000 | 88.8889 | 43.7500 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | * | * | 98.2993 | 97.1961 | 99.4278 | 44.2481 | 24127 | 696 | 23804 | 137 | 83 | 60.5839 | |
| ltrigg-rtg2 | INDEL | I6_15 | * | het | 98.7987 | 98.2358 | 99.3681 | 45.8366 | 9856 | 177 | 9592 | 61 | 15 | 24.5902 | |
| ltrigg-rtg2 | INDEL | I6_15 | * | hetalt | 97.3347 | 95.0298 | 99.7542 | 44.1554 | 8126 | 425 | 8116 | 20 | 19 | 95.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.9157 | 94.5455 | 97.3262 | 70.7584 | 364 | 21 | 364 | 10 | 2 | 20.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.6710 | 96.6154 | 98.7500 | 34.0206 | 628 | 22 | 632 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.9834 | 98.4772 | 99.4949 | 54.7945 | 194 | 3 | 197 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6187 | 99.3868 | 99.8516 | 38.0325 | 4052 | 25 | 4038 | 6 | 2 | 33.3333 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5386 | 99.2998 | 99.7786 | 39.6095 | 2269 | 16 | 2253 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3495 | 98.9177 | 99.7849 | 42.8747 | 457 | 5 | 464 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8494 | 99.6992 | 100.0000 | 33.0461 | 1326 | 4 | 1321 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.5517 | 93.3333 | 100.0000 | 56.3636 | 70 | 5 | 72 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 81.9277 | 13 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.6237 | 89.7959 | 100.0000 | 27.8689 | 44 | 5 | 44 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.0952 | 13 | 0 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m0_e0 | * | 97.7664 | 96.4079 | 99.1637 | 75.6190 | 832 | 31 | 830 | 7 | 1 | 14.2857 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m0_e0 | het | 97.5107 | 96.1083 | 98.9547 | 73.4013 | 568 | 23 | 568 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.7198 | 12 | 2 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m0_e0 | homalt | 98.6294 | 97.6744 | 99.6032 | 75.2456 | 252 | 6 | 251 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m1_e0 | * | 98.1106 | 96.9697 | 99.2786 | 76.3393 | 1792 | 56 | 1789 | 13 | 1 | 7.6923 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m1_e0 | het | 97.9933 | 97.0223 | 98.9839 | 74.5035 | 1173 | 36 | 1169 | 12 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 90.6977 | 82.9787 | 100.0000 | 93.6027 | 39 | 8 | 38 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 98.8920 | 97.9730 | 99.8285 | 75.6067 | 580 | 12 | 582 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e0 | * | 98.0973 | 96.9713 | 99.2497 | 77.4882 | 1857 | 58 | 1852 | 14 | 2 | 14.2857 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e0 | het | 97.9878 | 97.0541 | 98.9396 | 75.7755 | 1219 | 37 | 1213 | 13 | 1 | 7.6923 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 93.7600 | 40 | 8 | 39 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 98.8432 | 97.8723 | 99.8336 | 76.9113 | 598 | 13 | 600 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e1 | * | 98.0955 | 97.0088 | 99.2068 | 77.5974 | 1881 | 58 | 1876 | 15 | 2 | 13.3333 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e1 | het | 97.9674 | 97.0820 | 98.8691 | 75.9144 | 1231 | 37 | 1224 | 14 | 1 | 7.1429 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 91.4894 | 84.3137 | 100.0000 | 93.4066 | 43 | 8 | 42 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 98.8603 | 97.9032 | 99.8363 | 77.0646 | 607 | 13 | 610 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m0_e0 | * | 97.4313 | 95.5645 | 99.3724 | 79.4409 | 474 | 22 | 475 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m0_e0 | het | 97.0335 | 94.7826 | 99.3939 | 76.8908 | 327 | 18 | 328 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3607 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.2935 | 97.2973 | 99.3103 | 79.6919 | 144 | 4 | 144 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.0469 | 96.8750 | 99.2474 | 78.8205 | 1054 | 34 | 1055 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | het | 97.8418 | 96.6942 | 99.0169 | 76.5404 | 702 | 24 | 705 | 7 | 0 | 0.0000 | |