PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
13151-13200 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 89.5083 | 82.4047 | 97.9522 | 62.7700 | 281 | 60 | 287 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 78.1089 | 82.6087 | 74.0741 | 77.3109 | 19 | 4 | 20 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 90.8850 | 85.2657 | 97.2973 | 66.0239 | 353 | 61 | 360 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.4673 | 87.7358 | 100.0000 | 72.8814 | 93 | 13 | 96 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 90.7805 | 84.2657 | 98.3871 | 60.8215 | 241 | 45 | 244 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 81.3704 | 86.3636 | 76.9231 | 74.5098 | 19 | 3 | 20 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 87.9958 | 80.4949 | 97.0383 | 67.7165 | 553 | 134 | 557 | 17 | 15 | 88.2353 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 87.7766 | 78.8618 | 98.9637 | 70.5793 | 194 | 52 | 191 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 89.1342 | 81.8421 | 97.8528 | 62.7854 | 311 | 69 | 319 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 81.9321 | 78.6885 | 85.4545 | 77.6423 | 48 | 13 | 47 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 87.8760 | 79.8693 | 97.6669 | 68.5714 | 1222 | 308 | 1214 | 29 | 21 | 72.4138 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 86.4541 | 77.3273 | 98.0237 | 68.7461 | 515 | 151 | 496 | 10 | 2 | 20.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 90.2206 | 83.1563 | 98.5965 | 64.1509 | 548 | 111 | 562 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 84.7522 | 77.5610 | 93.4132 | 77.6139 | 159 | 46 | 156 | 11 | 11 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 89.7763 | 83.1250 | 97.5845 | 71.8559 | 399 | 81 | 404 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.5017 | 79.3750 | 100.0000 | 76.3916 | 127 | 33 | 123 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 90.2120 | 83.8710 | 97.5904 | 68.6003 | 234 | 45 | 243 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.5663 | 92.6829 | 90.4762 | 73.2484 | 38 | 3 | 38 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 50.0000 | 100.0000 | 90.0000 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 90.9091 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 87.5000 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 92.1830 | 87.2340 | 97.7273 | 64.2276 | 41 | 6 | 43 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5517 | 93.3333 | 100.0000 | 65.9574 | 14 | 1 | 16 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 88.3843 | 82.1429 | 95.6522 | 53.0612 | 23 | 5 | 22 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.4815 | 4 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 91.8670 | 86.0825 | 98.4848 | 65.2997 | 334 | 54 | 325 | 5 | 4 | 80.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.3706 | 85.7143 | 97.8261 | 63.1016 | 144 | 24 | 135 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 91.6942 | 85.1429 | 99.3377 | 63.8756 | 149 | 26 | 150 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 94.2258 | 91.1111 | 97.5610 | 74.2138 | 41 | 4 | 40 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 84.4444 | 73.0769 | 100.0000 | 84.7328 | 19 | 7 | 20 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 95.4545 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 85.0000 | 73.9130 | 100.0000 | 77.7778 | 17 | 6 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 92.9577 | 89.1892 | 97.0588 | 68.8073 | 33 | 4 | 33 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 93.3333 | 87.5000 | 100.0000 | 68.4211 | 14 | 2 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 91.6667 | 84.6154 | 100.0000 | 71.1111 | 11 | 2 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.1176 | 100.0000 | 88.8889 | 65.3846 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 33.3333 | 25.0000 | 50.0000 | 60.0000 | 1 | 3 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 75.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m0_e0 | * | 73.6842 | 63.6364 | 87.5000 | 77.1429 | 7 | 4 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m0_e0 | het | 80.0000 | 75.0000 | 85.7143 | 66.6667 | 6 | 2 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 88.8889 | 1 | 1 | 1 | 0 | 0 | ||