PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1251-1300 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m1_e0 | het | 94.6154 | 97.6190 | 91.7910 | 88.3173 | 123 | 3 | 123 | 11 | 6 | 54.5455 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m1_e0 | * | 94.9416 | 94.5736 | 95.3125 | 85.7936 | 244 | 14 | 244 | 12 | 6 | 50.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 91.0853 | 23 | 1 | 23 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 83.1683 | 17 | 2 | 17 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | het | 95.1613 | 98.3333 | 92.1875 | 89.6272 | 59 | 1 | 59 | 5 | 1 | 20.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | * | 95.6522 | 96.1165 | 95.1923 | 89.3443 | 99 | 4 | 99 | 5 | 1 | 20.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.5610 | 95.2381 | 100.0000 | 39.3939 | 20 | 1 | 20 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.7447 | 92.7835 | 98.9011 | 20.8696 | 90 | 7 | 90 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 84.0000 | 87.5000 | 80.7692 | 72.3404 | 21 | 3 | 21 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.9068 | 92.2535 | 95.6204 | 43.3884 | 131 | 11 | 131 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4325 | 98.8713 | 100.0000 | 31.8818 | 438 | 5 | 438 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3981 | 98.9726 | 99.8273 | 17.0487 | 578 | 6 | 578 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.0787 | 99.4310 | 98.7288 | 45.5803 | 699 | 4 | 699 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2764 | 99.1329 | 99.4203 | 34.7086 | 1715 | 15 | 1715 | 10 | 10 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.7013 | 98.9583 | 98.4456 | 43.0678 | 190 | 2 | 190 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.4239 | 91.9294 | 99.1946 | 24.7475 | 729 | 64 | 739 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 91.5617 | 96.6667 | 86.9688 | 73.4387 | 319 | 11 | 307 | 46 | 35 | 76.0870 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.9354 | 94.1445 | 95.7397 | 51.4296 | 1238 | 77 | 1236 | 55 | 43 | 78.1818 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7642 | 99.5294 | 100.0000 | 48.4461 | 846 | 4 | 846 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.5907 | 97.6311 | 99.5693 | 27.5733 | 1154 | 28 | 1156 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.7631 | 98.9728 | 98.5542 | 60.1632 | 1638 | 17 | 1636 | 24 | 21 | 87.5000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9394 | 98.6710 | 99.2092 | 50.5195 | 3638 | 49 | 3638 | 29 | 26 | 89.6552 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.7056 | 6 | 0 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 94.1176 | 88.8889 | 100.0000 | 98.5294 | 8 | 1 | 8 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.5000 | 88.0952 | 97.3684 | 99.3838 | 37 | 5 | 37 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 93.5780 | 89.4737 | 98.0769 | 99.4056 | 51 | 6 | 51 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.5920 | 74 | 0 | 74 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.4444 | 91.8919 | 97.1429 | 58.3333 | 34 | 3 | 34 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3548 | 99.3548 | 99.3548 | 83.2432 | 154 | 1 | 154 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.8679 | 98.4962 | 99.2424 | 81.2899 | 262 | 4 | 262 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 89.7959 | 81.9876 | 99.2481 | 34.4828 | 132 | 29 | 132 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.1178 | 74.4266 | 99.3958 | 24.0826 | 649 | 223 | 658 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 56.7944 | 80.4054 | 43.9024 | 68.0934 | 119 | 29 | 108 | 138 | 138 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.9237 | 76.2066 | 86.2632 | 43.6078 | 900 | 281 | 898 | 143 | 143 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.8636 | 98.0031 | 99.7394 | 39.6351 | 1914 | 39 | 1914 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.7679 | 94.4049 | 99.2523 | 24.5186 | 4505 | 267 | 4513 | 34 | 33 | 97.0588 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.1084 | 98.7559 | 91.7206 | 61.9079 | 2699 | 34 | 2692 | 243 | 239 | 98.3539 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.7018 | 96.4052 | 97.0003 | 44.3991 | 9118 | 340 | 9119 | 282 | 276 | 97.8723 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.6996 | 97.7430 | 99.6751 | 54.6036 | 3681 | 85 | 3681 | 12 | 7 | 58.3333 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.9446 | 92.7410 | 99.3774 | 27.6985 | 7474 | 585 | 7502 | 47 | 46 | 97.8723 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.3424 | 98.3065 | 92.5518 | 69.4000 | 5747 | 99 | 5716 | 460 | 444 | 96.5217 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.3294 | 95.6482 | 97.0203 | 55.0608 | 16902 | 769 | 16899 | 519 | 497 | 95.7611 | |