PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12901-12950 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | * | map_l100_m2_e1 | * | 99.2263 | 98.6673 | 99.7916 | 56.2116 | 73741 | 996 | 73738 | 154 | 24 | 15.5844 | |
| ltrigg-rtg2 | SNP | * | map_l100_m2_e1 | het | 98.8788 | 98.0660 | 99.7052 | 53.2399 | 45991 | 907 | 45990 | 136 | 8 | 5.8824 | |
| ltrigg-rtg2 | SNP | * | map_l100_m2_e1 | hetalt | 96.3855 | 93.0233 | 100.0000 | 65.5172 | 40 | 3 | 40 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l100_m2_e1 | homalt | 99.8127 | 99.6906 | 99.9351 | 60.3846 | 27710 | 86 | 27708 | 18 | 16 | 88.8889 | |
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | * | 98.2838 | 96.7501 | 99.8669 | 59.4717 | 18755 | 630 | 18753 | 25 | 4 | 16.0000 | |
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | het | 97.5444 | 95.3569 | 99.8346 | 54.8630 | 12076 | 588 | 12074 | 20 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 74.0741 | 7 | 2 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | homalt | 99.6639 | 99.4041 | 99.9251 | 65.7800 | 6672 | 40 | 6672 | 5 | 4 | 80.0000 | |
| ltrigg-rtg2 | SNP | * | map_l125_m1_e0 | * | 98.9740 | 98.1071 | 99.8563 | 58.5564 | 44469 | 858 | 44470 | 64 | 15 | 23.4375 | |
| ltrigg-rtg2 | SNP | * | map_l125_m1_e0 | het | 98.5086 | 97.2457 | 99.8048 | 55.1586 | 27610 | 782 | 27610 | 54 | 6 | 11.1111 | |
| ltrigg-rtg2 | SNP | * | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 61.1111 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l125_m1_e0 | homalt | 99.7511 | 99.5623 | 99.9406 | 63.1402 | 16831 | 74 | 16832 | 10 | 9 | 90.0000 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e0 | * | 98.9920 | 98.1594 | 99.8389 | 61.3454 | 45863 | 860 | 45865 | 74 | 15 | 20.2703 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e0 | het | 98.5358 | 97.3259 | 99.7762 | 57.8912 | 28534 | 784 | 28535 | 64 | 6 | 9.3750 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l125_m2_e0 | homalt | 99.7578 | 99.5741 | 99.9422 | 65.9494 | 17301 | 74 | 17302 | 10 | 9 | 90.0000 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e1 | * | 98.9981 | 98.1759 | 99.8341 | 61.4299 | 46341 | 861 | 46349 | 77 | 15 | 19.4805 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e1 | het | 98.5451 | 97.3516 | 99.7684 | 58.0187 | 28855 | 785 | 28856 | 67 | 6 | 8.9552 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l125_m2_e1 | homalt | 99.7600 | 99.5779 | 99.9428 | 65.9933 | 17458 | 74 | 17465 | 10 | 9 | 90.0000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m0_e0 | * | 97.7647 | 95.7862 | 99.8267 | 65.0696 | 11525 | 507 | 11521 | 20 | 4 | 20.0000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m0_e0 | het | 96.8156 | 94.0050 | 99.7994 | 59.7632 | 7464 | 476 | 7461 | 15 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l150_m0_e0 | homalt | 99.5584 | 99.2419 | 99.8769 | 71.8698 | 4058 | 31 | 4057 | 5 | 4 | 80.0000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m1_e0 | * | 98.7010 | 97.5595 | 99.8696 | 62.6893 | 29862 | 747 | 29864 | 39 | 9 | 23.0769 | |
| ltrigg-rtg2 | SNP | * | map_l150_m1_e0 | het | 98.0986 | 96.4227 | 99.8338 | 58.7339 | 18625 | 691 | 18625 | 31 | 2 | 6.4516 | |
| ltrigg-rtg2 | SNP | * | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 67.2727 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l150_m1_e0 | homalt | 99.7245 | 99.5210 | 99.9288 | 67.8086 | 11219 | 54 | 11221 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m2_e0 | * | 98.7380 | 97.6422 | 99.8587 | 65.4099 | 31101 | 751 | 31104 | 44 | 9 | 20.4545 | |
| ltrigg-rtg2 | SNP | * | map_l150_m2_e0 | het | 98.1544 | 96.5480 | 99.8151 | 61.4966 | 19438 | 695 | 19439 | 36 | 2 | 5.5556 | |
| ltrigg-rtg2 | SNP | * | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 71.4286 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l150_m2_e0 | homalt | 99.7345 | 99.5384 | 99.9314 | 70.4233 | 11645 | 54 | 11647 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m2_e1 | * | 98.7491 | 97.6622 | 99.8603 | 65.5073 | 31457 | 753 | 31463 | 44 | 9 | 20.4545 | |
| ltrigg-rtg2 | SNP | * | map_l150_m2_e1 | het | 98.1705 | 96.5771 | 99.8173 | 61.6528 | 19666 | 697 | 19666 | 36 | 2 | 5.5556 | |
| ltrigg-rtg2 | SNP | * | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 71.4286 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l150_m2_e1 | homalt | 99.7374 | 99.5434 | 99.9321 | 70.4609 | 11773 | 54 | 11779 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m0_e0 | * | 94.8478 | 90.5386 | 99.5876 | 84.4949 | 1933 | 202 | 1932 | 8 | 3 | 37.5000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m0_e0 | het | 92.7987 | 86.8526 | 99.6189 | 78.5270 | 1308 | 198 | 1307 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | * | map_l250_m0_e0 | homalt | 99.4431 | 99.3641 | 99.5223 | 90.1798 | 625 | 4 | 625 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m1_e0 | * | 96.9723 | 94.2398 | 99.8679 | 79.0649 | 6806 | 416 | 6806 | 9 | 4 | 44.4444 | |
| ltrigg-rtg2 | SNP | * | map_l250_m1_e0 | het | 95.5463 | 91.5878 | 99.8624 | 74.1983 | 4355 | 400 | 4355 | 6 | 1 | 16.6667 | |
| ltrigg-rtg2 | SNP | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 88.8889 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l250_m1_e0 | homalt | 99.6541 | 99.4316 | 99.8777 | 84.3152 | 2449 | 14 | 2449 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e0 | * | 97.1607 | 94.6100 | 99.8528 | 80.6416 | 7460 | 425 | 7460 | 11 | 4 | 36.3636 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e0 | het | 95.8350 | 92.1448 | 99.8331 | 76.0408 | 4786 | 408 | 4786 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 86.9565 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l250_m2_e0 | homalt | 99.6642 | 99.4415 | 99.8878 | 85.5934 | 2671 | 15 | 2671 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e1 | * | 97.1847 | 94.6538 | 99.8547 | 80.7686 | 7560 | 427 | 7560 | 11 | 4 | 36.3636 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e1 | het | 95.8720 | 92.2112 | 99.8355 | 76.2366 | 4854 | 410 | 4854 | 8 | 1 | 12.5000 | |