PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12801-12850 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | tv | map_siren | homalt | 99.8781 | 99.7912 | 99.9651 | 52.8102 | 17204 | 36 | 17198 | 6 | 4 | 66.6667 | |
| ltrigg-rtg2 | SNP | tv | segdup | * | 98.9872 | 99.6132 | 98.3690 | 88.4663 | 8499 | 33 | 8504 | 141 | 21 | 14.8936 | |
| ltrigg-rtg2 | SNP | tv | segdup | het | 98.5667 | 99.4137 | 97.7340 | 87.6779 | 5256 | 31 | 5262 | 122 | 2 | 1.6393 | |
| ltrigg-rtg2 | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8037 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | segdup | homalt | 99.6765 | 99.9382 | 99.4161 | 89.5171 | 3236 | 2 | 3235 | 19 | 19 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | tv | tech_badpromoters | * | 98.6301 | 100.0000 | 97.2973 | 60.0000 | 72 | 0 | 72 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | tech_badpromoters | het | 97.0588 | 100.0000 | 94.2857 | 65.6863 | 33 | 0 | 33 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | SNP | tv | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.0120 | 39 | 0 | 39 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.6510 | 98.5407 | 96.7772 | 70.9827 | 28293 | 419 | 28618 | 953 | 37 | 3.8825 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.7500 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5299 | 99.1222 | 99.9409 | 66.9776 | 16826 | 149 | 16910 | 10 | 6 | 60.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.0504 | 99.1851 | 96.9413 | 58.5086 | 4260 | 35 | 4342 | 137 | 1 | 0.7299 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.0353 | 98.9576 | 95.1862 | 61.9773 | 2658 | 28 | 2709 | 137 | 1 | 0.7299 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7820 | 99.5649 | 100.0000 | 50.4551 | 1602 | 7 | 1633 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.0901 | 99.5957 | 98.5896 | 55.8133 | 6159 | 25 | 6291 | 90 | 2 | 2.2222 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.6723 | 99.5675 | 97.7930 | 57.7847 | 3914 | 17 | 3988 | 90 | 2 | 2.2222 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8221 | 99.6448 | 100.0000 | 51.7603 | 2244 | 8 | 2302 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5424 | 99.7679 | 99.3178 | 59.4259 | 3869 | 9 | 3931 | 27 | 1 | 3.7037 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.3488 | 99.7594 | 98.9416 | 60.6388 | 2488 | 6 | 2524 | 27 | 1 | 3.7037 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8914 | 99.7831 | 100.0000 | 57.0031 | 1380 | 3 | 1406 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.1502 | 87.3057 | 95.3488 | 87.7362 | 337 | 49 | 328 | 16 | 1 | 6.2500 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.7724 | 88.0435 | 93.6759 | 87.8424 | 243 | 33 | 237 | 16 | 1 | 6.2500 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.1569 | 85.4545 | 100.0000 | 87.4309 | 94 | 16 | 91 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.2000 | 97.2028 | 99.2178 | 83.0336 | 2641 | 76 | 2537 | 20 | 1 | 5.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.2673 | 97.7324 | 98.8081 | 84.5914 | 1724 | 40 | 1658 | 20 | 1 | 5.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.7273 | 2 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.0707 | 96.2145 | 100.0000 | 78.9928 | 915 | 36 | 876 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.9507 | 98.3108 | 99.5989 | 82.2763 | 2328 | 40 | 2235 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.0937 | 98.8111 | 99.3780 | 84.1286 | 1496 | 18 | 1438 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.7273 | 2 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.6920 | 97.4178 | 100.0000 | 77.5262 | 830 | 22 | 794 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.5533 | 98.7871 | 98.3205 | 78.4263 | 10670 | 131 | 10713 | 183 | 3 | 1.6393 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.0864 | 98.7941 | 97.3887 | 79.6107 | 6800 | 83 | 6825 | 183 | 3 | 1.6393 | |