PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12601-12650 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | * | HG002complexvar | hetalt | 86.4462 | 77.1560 | 98.2798 | 67.7484 | 2854 | 845 | 3028 | 53 | 52 | 98.1132 | |
| mlin-fermikit | INDEL | * | HG002complexvar | homalt | 95.7600 | 96.3222 | 95.2043 | 55.1307 | 26033 | 994 | 25927 | 1306 | 1267 | 97.0138 | |
| mlin-fermikit | INDEL | * | HG002compoundhet | * | 67.1085 | 66.3284 | 67.9072 | 58.7807 | 19872 | 10088 | 19761 | 9339 | 9228 | 98.8114 | |
| mlin-fermikit | INDEL | * | HG002compoundhet | het | 43.9232 | 77.6258 | 30.6263 | 58.8856 | 3178 | 916 | 2983 | 6757 | 6682 | 98.8900 | |
| mlin-fermikit | INDEL | * | HG002compoundhet | hetalt | 77.7377 | 63.7887 | 99.4948 | 53.3255 | 16062 | 9118 | 16150 | 82 | 81 | 98.7805 | |
| mlin-fermikit | INDEL | * | HG002compoundhet | homalt | 32.9688 | 92.1283 | 20.0767 | 74.2148 | 632 | 54 | 628 | 2500 | 2465 | 98.6000 | |
| mlin-fermikit | INDEL | * | decoy | * | 95.2381 | 100.0000 | 90.9091 | 99.9020 | 10 | 0 | 10 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | decoy | het | 92.3077 | 100.0000 | 85.7143 | 99.8970 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.7442 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9256 | 3 | 0 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | func_cds | * | 98.6486 | 98.4270 | 98.8713 | 35.8900 | 438 | 7 | 438 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | * | func_cds | het | 98.1221 | 97.6636 | 98.5849 | 37.4631 | 209 | 5 | 209 | 3 | 1 | 33.3333 | |
| mlin-fermikit | INDEL | * | func_cds | hetalt | 75.0000 | 60.0000 | 100.0000 | 66.6667 | 3 | 2 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | func_cds | homalt | 99.5595 | 100.0000 | 99.1228 | 33.5277 | 226 | 0 | 226 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 72.4419 | 70.6939 | 74.2785 | 64.5876 | 7121 | 2952 | 7026 | 2433 | 2324 | 95.5199 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 73.6558 | 85.1238 | 64.9109 | 67.0798 | 3439 | 601 | 3241 | 1752 | 1680 | 95.8904 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 58.6637 | 41.7103 | 98.8365 | 49.0818 | 1595 | 2229 | 1699 | 20 | 18 | 90.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 84.1988 | 94.4771 | 75.9374 | 66.3688 | 2087 | 122 | 2086 | 661 | 626 | 94.7050 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 74.4186 | 80.0000 | 69.5652 | 99.3068 | 16 | 4 | 16 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 80.0000 | 83.3333 | 76.9231 | 99.2709 | 10 | 2 | 10 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.9011 | 1 | 2 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 71.4286 | 100.0000 | 55.5556 | 99.3767 | 5 | 0 | 5 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 92.8446 | 92.0624 | 93.6403 | 70.3210 | 86952 | 7497 | 86813 | 5896 | 5729 | 97.1676 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 93.6687 | 95.2332 | 92.1549 | 68.7890 | 45970 | 2301 | 45789 | 3898 | 3775 | 96.8445 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 82.5569 | 70.6298 | 99.3305 | 60.9945 | 10889 | 4528 | 10979 | 74 | 74 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.8665 | 97.8284 | 93.9817 | 74.3916 | 30093 | 668 | 30045 | 1924 | 1880 | 97.7131 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 87.1515 | 85.9467 | 88.3906 | 61.9558 | 56167 | 9184 | 55976 | 7352 | 7082 | 96.3275 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 87.9422 | 91.6371 | 84.5336 | 63.1509 | 27931 | 2549 | 27596 | 5049 | 4851 | 96.0784 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 77.7997 | 63.9808 | 99.2322 | 42.2569 | 10688 | 6017 | 10856 | 84 | 82 | 97.6190 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 92.5136 | 96.5980 | 88.7606 | 66.4930 | 17548 | 618 | 17524 | 2219 | 2149 | 96.8454 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.1665 | 91.3265 | 93.0222 | 72.9912 | 1969 | 187 | 1973 | 148 | 100 | 67.5676 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 92.5879 | 91.9586 | 93.2258 | 73.3046 | 1155 | 101 | 1156 | 84 | 55 | 65.4762 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 79.1393 | 65.8683 | 99.1071 | 71.1340 | 110 | 57 | 111 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 93.8778 | 96.0437 | 91.8075 | 72.7305 | 704 | 29 | 706 | 63 | 44 | 69.8413 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.6757 | 82.3529 | 70.0000 | 99.3709 | 14 | 3 | 14 | 6 | 3 | 50.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 81.8182 | 90.0000 | 75.0000 | 99.2945 | 9 | 1 | 9 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.7342 | 1 | 2 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 72.7273 | 100.0000 | 57.1429 | 99.4996 | 4 | 0 | 4 | 3 | 1 | 33.3333 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.0150 | 95.3702 | 96.6686 | 70.3632 | 4882 | 237 | 4875 | 168 | 149 | 88.6905 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.1180 | 95.8000 | 96.4382 | 69.3543 | 2874 | 126 | 2870 | 106 | 91 | 85.8491 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 87.7721 | 78.5408 | 99.4624 | 73.8764 | 183 | 50 | 185 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.7613 | 96.7656 | 96.7570 | 71.4697 | 1825 | 61 | 1820 | 61 | 57 | 93.4426 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.9189 | 96.4670 | 97.3750 | 70.9358 | 3495 | 128 | 3487 | 94 | 86 | 91.4894 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.0720 | 97.0065 | 97.1375 | 69.1696 | 2074 | 64 | 2070 | 61 | 54 | 88.5246 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 89.5397 | 81.0606 | 100.0000 | 76.2115 | 107 | 25 | 108 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.3288 | 97.1175 | 97.5410 | 72.9162 | 1314 | 39 | 1309 | 33 | 32 | 96.9697 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 67.9552 | 65.9379 | 70.1000 | 59.0467 | 4011 | 2072 | 3927 | 1675 | 1645 | 98.2090 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 67.4387 | 82.0937 | 57.2234 | 62.0538 | 1788 | 390 | 1624 | 1214 | 1194 | 98.3526 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 57.8606 | 40.8740 | 99.0058 | 44.7850 | 1113 | 1610 | 1195 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.9684 | 93.9086 | 71.1625 | 61.2108 | 1110 | 72 | 1108 | 449 | 440 | 97.9955 | |