PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11951-12000 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | * | map_l125_m1_e0 | hetalt | 75.7576 | 62.5000 | 96.1538 | 87.0647 | 25 | 15 | 25 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l125_m1_e0 | homalt | 70.9025 | 67.0765 | 75.1914 | 80.2241 | 491 | 241 | 491 | 162 | 142 | 87.6543 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e0 | * | 69.1050 | 57.7869 | 85.9364 | 82.6204 | 1269 | 927 | 1271 | 208 | 160 | 76.9231 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e0 | het | 67.2880 | 52.1927 | 94.6684 | 82.7849 | 726 | 665 | 728 | 41 | 17 | 41.4634 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e0 | hetalt | 75.3623 | 61.9048 | 96.2963 | 89.1566 | 26 | 16 | 26 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e0 | homalt | 71.5076 | 67.7588 | 75.6955 | 81.9979 | 517 | 246 | 517 | 166 | 143 | 86.1446 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e1 | * | 69.4080 | 58.1573 | 86.0558 | 82.7274 | 1294 | 931 | 1296 | 210 | 161 | 76.6667 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e1 | het | 67.5834 | 52.5568 | 94.6429 | 82.8559 | 740 | 668 | 742 | 42 | 17 | 40.4762 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e1 | hetalt | 74.2857 | 60.4651 | 96.2963 | 89.4531 | 26 | 17 | 26 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e1 | homalt | 71.8856 | 68.2171 | 75.9712 | 82.1337 | 528 | 246 | 528 | 167 | 144 | 86.2275 | |
| mlin-fermikit | INDEL | * | map_l150_m0_e0 | * | 55.2333 | 42.6070 | 78.4946 | 86.0290 | 219 | 295 | 219 | 60 | 41 | 68.3333 | |
| mlin-fermikit | INDEL | * | map_l150_m0_e0 | het | 52.0833 | 36.6569 | 89.9281 | 85.9312 | 125 | 216 | 125 | 14 | 4 | 28.5714 | |
| mlin-fermikit | INDEL | * | map_l150_m0_e0 | hetalt | 33.3333 | 22.2222 | 66.6667 | 92.5000 | 2 | 7 | 2 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m0_e0 | homalt | 61.1296 | 56.0976 | 67.1533 | 85.8617 | 92 | 72 | 92 | 45 | 37 | 82.2222 | |
| mlin-fermikit | INDEL | * | map_l150_m1_e0 | * | 64.0388 | 51.4948 | 84.6626 | 83.0385 | 689 | 649 | 690 | 125 | 100 | 80.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m1_e0 | het | 62.0720 | 46.3158 | 94.0758 | 82.6051 | 396 | 459 | 397 | 25 | 12 | 48.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m1_e0 | hetalt | 58.0645 | 42.8571 | 90.0000 | 91.8699 | 9 | 12 | 9 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m1_e0 | homalt | 67.2189 | 61.4719 | 74.1514 | 83.0230 | 284 | 178 | 284 | 99 | 88 | 88.8889 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e0 | * | 64.8581 | 52.4858 | 84.8624 | 85.1067 | 739 | 669 | 740 | 132 | 104 | 78.7879 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e0 | het | 63.1452 | 47.4614 | 94.3107 | 84.9473 | 430 | 476 | 431 | 26 | 12 | 46.1538 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e0 | hetalt | 58.0645 | 42.8571 | 90.0000 | 93.2886 | 9 | 12 | 9 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e0 | homalt | 67.7201 | 62.3701 | 74.0741 | 84.8315 | 300 | 181 | 300 | 105 | 92 | 87.6190 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e1 | * | 65.1571 | 52.8145 | 85.0279 | 85.1378 | 760 | 679 | 761 | 134 | 106 | 79.1045 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e1 | het | 63.3120 | 47.6190 | 94.4325 | 85.0560 | 440 | 484 | 441 | 26 | 12 | 46.1538 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e1 | hetalt | 58.8235 | 43.4783 | 90.9091 | 92.9487 | 10 | 13 | 10 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e1 | homalt | 68.2068 | 63.0081 | 74.3405 | 84.7866 | 310 | 182 | 310 | 107 | 94 | 87.8505 | |
| mlin-fermikit | INDEL | * | map_l250_m0_e0 | * | 40.7080 | 29.4872 | 65.7143 | 95.2381 | 23 | 55 | 23 | 12 | 7 | 58.3333 | |
| mlin-fermikit | INDEL | * | map_l250_m0_e0 | het | 34.7826 | 22.6415 | 75.0000 | 95.5307 | 12 | 41 | 12 | 4 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | * | map_l250_m0_e0 | homalt | 50.0000 | 44.0000 | 57.8947 | 94.7368 | 11 | 14 | 11 | 8 | 7 | 87.5000 | |
| mlin-fermikit | INDEL | * | map_l250_m1_e0 | * | 52.1158 | 38.3607 | 81.2500 | 92.0966 | 117 | 188 | 117 | 27 | 20 | 74.0741 | |
| mlin-fermikit | INDEL | * | map_l250_m1_e0 | het | 46.6926 | 31.5789 | 89.5522 | 92.7095 | 60 | 130 | 60 | 7 | 1 | 14.2857 | |
| mlin-fermikit | INDEL | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.2308 | 3 | 3 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l250_m1_e0 | homalt | 59.0164 | 49.5413 | 72.9730 | 91.3043 | 54 | 55 | 54 | 20 | 19 | 95.0000 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e0 | * | 53.6585 | 39.8792 | 81.9876 | 92.9540 | 132 | 199 | 132 | 29 | 21 | 72.4138 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e0 | het | 48.6111 | 33.3333 | 89.7436 | 93.3504 | 70 | 140 | 70 | 8 | 1 | 12.5000 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.0000 | 3 | 3 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l250_m2_e0 | homalt | 60.5128 | 51.3043 | 73.7500 | 92.2854 | 59 | 56 | 59 | 21 | 20 | 95.2381 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e1 | * | 53.7374 | 39.9399 | 82.0988 | 93.1530 | 133 | 200 | 133 | 29 | 21 | 72.4138 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e1 | het | 48.4429 | 33.1754 | 89.7436 | 93.5537 | 70 | 141 | 70 | 8 | 1 | 12.5000 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.2025 | 3 | 3 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l250_m2_e1 | homalt | 60.9137 | 51.7241 | 74.0741 | 92.4791 | 60 | 56 | 60 | 21 | 20 | 95.2381 | |
| mlin-fermikit | INDEL | * | map_siren | * | 83.8340 | 77.0310 | 91.9549 | 78.2144 | 5708 | 1702 | 5715 | 500 | 406 | 81.2000 | |
| mlin-fermikit | INDEL | * | map_siren | het | 83.7074 | 75.1996 | 94.3858 | 76.9241 | 3390 | 1118 | 3396 | 202 | 141 | 69.8020 | |
| mlin-fermikit | INDEL | * | map_siren | hetalt | 76.4268 | 62.3482 | 98.7179 | 84.3687 | 154 | 93 | 154 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | * | map_siren | homalt | 84.6161 | 81.5066 | 87.9724 | 79.3852 | 2164 | 491 | 2165 | 296 | 264 | 89.1892 | |
| mlin-fermikit | INDEL | * | segdup | * | 95.7518 | 94.7966 | 96.7265 | 92.3178 | 2423 | 133 | 2423 | 82 | 67 | 81.7073 | |
| mlin-fermikit | INDEL | * | segdup | het | 95.7622 | 95.6344 | 95.8904 | 92.0914 | 1402 | 64 | 1400 | 60 | 46 | 76.6667 | |
| mlin-fermikit | INDEL | * | segdup | hetalt | 80.1843 | 66.9231 | 100.0000 | 93.8999 | 87 | 43 | 89 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | segdup | homalt | 97.4948 | 97.2917 | 97.6987 | 92.4653 | 934 | 26 | 934 | 22 | 21 | 95.4545 | |