PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10951-11000 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 86.9863 | 88.6640 | 85.3710 | 87.2287 | 2409 | 308 | 2416 | 414 | 264 | 63.7681 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 88.2477 | 83.3900 | 93.7063 | 86.7826 | 1471 | 293 | 1474 | 99 | 13 | 13.1313 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 2 | 0 | 2 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 85.0654 | 98.4227 | 74.9004 | 87.7501 | 936 | 15 | 940 | 315 | 251 | 79.6825 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 88.0789 | 89.7382 | 86.4799 | 86.3258 | 2125 | 243 | 2130 | 333 | 219 | 65.7658 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 89.1561 | 84.4122 | 94.4649 | 85.8278 | 1278 | 236 | 1280 | 75 | 7 | 9.3333 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.8182 | 2 | 0 | 2 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 86.4854 | 99.1784 | 76.6727 | 86.8957 | 845 | 7 | 848 | 258 | 212 | 82.1705 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.4419 | 95.8245 | 95.0624 | 80.9574 | 10350 | 451 | 10358 | 538 | 336 | 62.4535 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.7409 | 93.7237 | 97.8469 | 79.8823 | 6451 | 432 | 6453 | 142 | 16 | 11.2676 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.9504 | 99.5147 | 90.7864 | 82.3867 | 3896 | 19 | 3902 | 396 | 320 | 80.8081 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 95.2752 | 94.6742 | 95.8839 | 71.5291 | 43268 | 2434 | 43282 | 1858 | 1107 | 59.5802 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.8647 | 92.1636 | 97.7290 | 70.8955 | 26462 | 2250 | 26465 | 615 | 21 | 3.4146 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.5517 | 93.3333 | 100.0000 | 85.5670 | 14 | 1 | 14 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.9291 | 98.9219 | 93.1120 | 72.4097 | 16792 | 183 | 16803 | 1243 | 1086 | 87.3693 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.0726 | 96.5229 | 95.6265 | 68.5165 | 9355 | 337 | 9380 | 429 | 282 | 65.7343 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.5588 | 94.6921 | 98.5005 | 68.4089 | 5905 | 331 | 5912 | 90 | 4 | 4.4444 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.2599 | 99.8263 | 91.0930 | 68.6491 | 3449 | 6 | 3467 | 339 | 278 | 82.0059 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 61.1765 | 61.9048 | 60.4651 | 96.8101 | 26 | 16 | 26 | 17 | 10 | 58.8235 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 62.5000 | 55.5556 | 71.4286 | 97.1074 | 15 | 12 | 15 | 6 | 3 | 50.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 59.4595 | 73.3333 | 50.0000 | 96.4630 | 11 | 4 | 11 | 11 | 7 | 63.6364 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.8486 | 98.4572 | 99.2431 | 55.7060 | 16912 | 265 | 16914 | 129 | 121 | 93.7984 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.9381 | 97.9340 | 99.9631 | 55.1737 | 10855 | 229 | 10848 | 4 | 0 | 0.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.6888 | 99.4087 | 97.9793 | 56.5956 | 6052 | 36 | 6061 | 125 | 121 | 96.8000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.3012 | 97.9926 | 98.6117 | 39.2636 | 17818 | 365 | 17829 | 251 | 187 | 74.5020 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2999 | 97.0961 | 99.5339 | 37.5098 | 11101 | 332 | 11105 | 52 | 7 | 13.4615 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 5 | 0 | 5 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.3026 | 99.5107 | 97.1234 | 41.8851 | 6712 | 33 | 6719 | 199 | 180 | 90.4523 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 72.9167 | 73.4266 | 72.4138 | 93.7392 | 105 | 38 | 105 | 40 | 29 | 72.5000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 74.3169 | 66.6667 | 83.9506 | 94.3906 | 68 | 34 | 68 | 13 | 3 | 23.0769 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 70.4762 | 90.2439 | 57.8125 | 92.6606 | 37 | 4 | 37 | 27 | 26 | 96.2963 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.1429 | 97.6886 | 98.6014 | 32.5284 | 7185 | 170 | 7191 | 102 | 76 | 74.5098 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.0092 | 96.5121 | 99.5535 | 31.2615 | 4455 | 161 | 4459 | 20 | 0 | 0.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.3611 | 99.6713 | 97.0850 | 34.4289 | 2729 | 9 | 2731 | 82 | 76 | 92.6829 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 88.8889 | 88.8889 | 88.8889 | 96.8421 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |