PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10751-10800 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 74.6313 | 61.1111 | 95.8333 | 91.7241 | 22 | 14 | 23 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 45.4545 | 100.0000 | 29.4118 | 88.2759 | 6 | 0 | 5 | 12 | 12 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.1542 | 97.8551 | 98.4553 | 37.1727 | 3376 | 74 | 3378 | 53 | 35 | 66.0377 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.0340 | 96.7727 | 99.3285 | 36.5490 | 2069 | 69 | 2071 | 14 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.3434 | 99.6186 | 97.1004 | 38.0755 | 1306 | 5 | 1306 | 39 | 35 | 89.7436 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 100.0000 | 50.0000 | 97.6190 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 100.0000 | 50.0000 | 96.2264 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | map_l100_m0_e0 | * | 58.6013 | 45.6875 | 81.6920 | 55.0247 | 5064 | 6020 | 5060 | 1134 | 1011 | 89.1534 | |
| mlin-fermikit | SNP | tv | map_l100_m0_e0 | het | 56.5874 | 39.7258 | 98.3185 | 59.7124 | 2869 | 4353 | 2865 | 49 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l100_m0_e0 | hetalt | 31.5789 | 18.7500 | 100.0000 | 80.0000 | 3 | 13 | 3 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l100_m0_e0 | homalt | 61.5471 | 56.9943 | 66.8904 | 49.7701 | 2192 | 1654 | 2192 | 1085 | 1011 | 93.1797 | |
| mlin-fermikit | SNP | tv | map_l100_m1_e0 | * | 70.4651 | 58.3772 | 88.8661 | 53.8051 | 14303 | 10198 | 14295 | 1791 | 1587 | 88.6097 | |
| mlin-fermikit | SNP | tv | map_l100_m1_e0 | het | 69.7650 | 53.9859 | 98.5774 | 56.8653 | 8323 | 7094 | 8315 | 120 | 2 | 1.6667 | |
| mlin-fermikit | SNP | tv | map_l100_m1_e0 | hetalt | 56.1404 | 39.0244 | 100.0000 | 68.6275 | 16 | 25 | 16 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l100_m1_e0 | homalt | 71.5194 | 65.9516 | 78.1139 | 49.8226 | 5964 | 3079 | 5964 | 1671 | 1585 | 94.8534 | |
| mlin-fermikit | SNP | tv | map_l100_m2_e0 | * | 71.0756 | 59.1180 | 89.0970 | 57.6083 | 14799 | 10234 | 14791 | 1810 | 1594 | 88.0663 | |
| mlin-fermikit | SNP | tv | map_l100_m2_e0 | het | 70.4610 | 54.8457 | 98.5073 | 60.6122 | 8653 | 7124 | 8645 | 131 | 2 | 1.5267 | |
| mlin-fermikit | SNP | tv | map_l100_m2_e0 | hetalt | 57.6271 | 40.4762 | 100.0000 | 71.6667 | 17 | 25 | 17 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l100_m2_e0 | homalt | 72.0127 | 66.5183 | 78.4964 | 53.5791 | 6129 | 3085 | 6129 | 1679 | 1592 | 94.8183 | |
| mlin-fermikit | SNP | tv | map_l100_m2_e1 | * | 71.2430 | 59.3165 | 89.1725 | 57.7345 | 14997 | 10286 | 14989 | 1820 | 1600 | 87.9121 | |
| mlin-fermikit | SNP | tv | map_l100_m2_e1 | het | 70.6499 | 55.0822 | 98.4842 | 60.7475 | 8779 | 7159 | 8771 | 135 | 2 | 1.4815 | |
| mlin-fermikit | SNP | tv | map_l100_m2_e1 | hetalt | 59.0164 | 41.8605 | 100.0000 | 70.9677 | 18 | 25 | 18 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l100_m2_e1 | homalt | 72.1476 | 66.6523 | 78.6303 | 53.6694 | 6200 | 3102 | 6200 | 1685 | 1598 | 94.8368 | |
| mlin-fermikit | SNP | tv | map_l125_m0_e0 | * | 51.6639 | 38.2748 | 79.4606 | 60.5371 | 2538 | 4093 | 2534 | 655 | 574 | 87.6336 | |
| mlin-fermikit | SNP | tv | map_l125_m0_e0 | het | 48.9678 | 32.6289 | 98.0822 | 65.3700 | 1436 | 2965 | 1432 | 28 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | map_l125_m0_e0 | homalt | 55.7975 | 49.6173 | 63.7363 | 55.1608 | 1102 | 1119 | 1102 | 627 | 574 | 91.5470 | |
| mlin-fermikit | SNP | tv | map_l125_m1_e0 | * | 61.8003 | 48.5452 | 85.0126 | 58.2565 | 7775 | 8241 | 7771 | 1370 | 1205 | 87.9562 | |
| mlin-fermikit | SNP | tv | map_l125_m1_e0 | het | 60.2787 | 43.5216 | 98.0187 | 62.6103 | 4407 | 5719 | 4403 | 89 | 1 | 1.1236 | |
| mlin-fermikit | SNP | tv | map_l125_m1_e0 | hetalt | 46.1538 | 30.0000 | 100.0000 | 68.9655 | 9 | 21 | 9 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l125_m1_e0 | homalt | 63.9810 | 57.3208 | 72.3922 | 52.9173 | 3359 | 2501 | 3359 | 1281 | 1204 | 93.9891 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e0 | * | 62.7919 | 49.6210 | 85.4813 | 62.5997 | 8182 | 8307 | 8178 | 1389 | 1218 | 87.6890 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e0 | het | 61.4279 | 44.7328 | 98.0050 | 66.8730 | 4671 | 5771 | 4667 | 95 | 1 | 1.0526 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e0 | hetalt | 46.1538 | 30.0000 | 100.0000 | 76.3158 | 9 | 21 | 9 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l125_m2_e0 | homalt | 64.7739 | 58.2018 | 73.0192 | 57.0520 | 3502 | 2515 | 3502 | 1294 | 1217 | 94.0495 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e1 | * | 62.9750 | 49.8289 | 85.5434 | 62.7659 | 8300 | 8357 | 8296 | 1402 | 1229 | 87.6605 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e1 | het | 61.6520 | 44.9730 | 97.9955 | 67.0300 | 4746 | 5807 | 4742 | 97 | 1 | 1.0309 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e1 | hetalt | 46.1538 | 30.0000 | 100.0000 | 76.9231 | 9 | 21 | 9 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l125_m2_e1 | homalt | 64.9030 | 58.3635 | 73.0928 | 57.1933 | 3545 | 2529 | 3545 | 1305 | 1228 | 94.0996 | |
| mlin-fermikit | SNP | tv | map_l150_m0_e0 | * | 46.6065 | 33.3972 | 77.1018 | 65.0425 | 1394 | 2780 | 1394 | 414 | 356 | 85.9903 | |
| mlin-fermikit | SNP | tv | map_l150_m0_e0 | het | 43.5638 | 28.0338 | 97.6716 | 69.5976 | 797 | 2046 | 797 | 19 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||